ctcRbase

Entry Detail

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General Information

Database ID: BRCA00644 Cancer Type: breast cancer Dataset: GSE51827 CTCs/CTM Isolation Method: CTC-iChip

Gene Information

ncRNA Symbol: H3F3B Full Name: H3 histone family member 3B Category: mRNA Synonyms: H3.3B Chromosome: chr17 Strand: - Coordinate: Start Site(bp): 75776434 End Site(bp): 75785893 Gene Summary: Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene contains introns and its mRNA is polyadenylated, unlike most histone genes. The protein encoded by this gene is a replication-independent histone that is a member of the histone H3 family. Pseudogenes of this gene have been identified on the X chromosome, and on chromosomes 5, 13 and 17. [provided by RefSeq, Oct 2015] External Links: Ensembl ID: ENSG00000132475 HGNC ID: HGNC:4765 Entrez Gene: 3021

Expression Profile of H3F3B Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-10a-5p YES YES YES hsa-miR-10b-5p YES YES YES hsa-miR-1224-5p YES NO YES hsa-miR-128-3p YES YES YES hsa-miR-129-2-3p YES NO YES hsa-miR-132-3p YES YES YES hsa-miR-137 YES YES YES hsa-miR-138-5p YES YES YES hsa-miR-1-3p YES YES YES hsa-miR-181a-5p YES YES NO hsa-miR-181b-5p YES YES NO hsa-miR-181c-5p YES YES NO hsa-miR-181d-5p YES YES NO hsa-miR-188-5p YES NO YES hsa-miR-192-5p YES YES YES hsa-miR-196a-5p YES YES NO hsa-miR-196b-5p YES YES NO hsa-miR-206 YES YES YES hsa-miR-208a-3p YES NO YES hsa-miR-208b-3p YES NO YES hsa-miR-212-3p YES YES YES hsa-miR-215-5p YES YES YES hsa-miR-21-5p YES YES NO hsa-miR-22-3p YES YES YES hsa-miR-224-5p YES YES YES hsa-miR-23a-3p YES YES NO hsa-miR-23b-3p YES YES NO hsa-miR-25-3p YES NO YES hsa-miR-27a-3p YES YES YES hsa-miR-27b-3p YES YES YES hsa-miR-299-5p YES NO YES hsa-miR-300 YES YES NO hsa-miR-320a YES YES YES hsa-miR-320b YES YES YES hsa-miR-320c YES YES YES hsa-miR-320d YES YES YES hsa-miR-32-5p YES NO YES hsa-miR-329-3p YES YES YES hsa-miR-340-5p YES YES YES hsa-miR-362-3p YES YES YES hsa-miR-363-3p YES NO YES hsa-miR-367-3p YES NO YES hsa-miR-369-3p YES NO YES hsa-miR-374a-5p YES YES YES hsa-miR-374b-5p YES YES YES hsa-miR-378a-3p YES YES YES hsa-miR-379-5p YES NO YES hsa-miR-381-3p YES YES NO hsa-miR-409-3p YES NO YES hsa-miR-410-3p YES YES YES hsa-miR-422a YES YES YES hsa-miR-448 YES YES YES hsa-miR-483-3p YES NO YES hsa-miR-486-5p YES YES YES hsa-miR-494-3p YES YES YES hsa-miR-499a-5p YES YES YES hsa-miR-505-3p YES YES YES hsa-miR-543 YES YES NO hsa-miR-590-5p YES YES NO hsa-miR-613 YES YES YES hsa-miR-653-5p YES YES NO hsa-miR-668-3p YES NO YES hsa-miR-92a-3p YES NO YES hsa-miR-92b-3p YES NO YES Display: