ctcRbase

Entry Detail

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General Information

Database ID: BRCA00990 Cancer Type: breast cancer Dataset: GSE41245 CTCs/CTM Isolation Method: CTC-Chip

Gene Information

ncRNA Symbol: SRSF6 Full Name: serine and arginine rich splicing factor 6 Category: mRNA Synonyms: B52|HEL-S-91|SFRS6|SRP55 Chromosome: chr20 Strand: + Coordinate: Start Site(bp): 43457928 End Site(bp): 43464247 Gene Summary: The protein encoded by this gene is involved in mRNA splicing and may play a role in the determination of alternative splicing. The encoded nuclear protein belongs to the splicing factor SR family and has been shown to bind with and modulate another member of the family, SFRS12. Alternative splicing results in multiple transcript variants. In addition, two pseudogenes, one on chromosome 17 and the other on the X chromosome, have been found for this gene.[provided by RefSeq, Sep 2010] External Links: Ensembl ID: ENSG00000124193 HGNC ID: HGNC:10788 Entrez Gene: 6431

Expression Profile of SRSF6 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES YES NO hsa-miR-124-3p YES YES YES hsa-miR-1271-5p YES NO YES hsa-miR-128-3p YES YES NO hsa-miR-1297 YES YES NO hsa-miR-134-5p YES YES NO hsa-miR-137 YES YES YES hsa-miR-138-5p YES NO YES hsa-miR-141-3p YES YES NO hsa-miR-146a-5p YES YES NO hsa-miR-146b-5p YES YES NO hsa-miR-182-5p YES YES YES hsa-miR-192-5p YES YES YES hsa-miR-193a-3p YES YES YES hsa-miR-193a-5p YES NO YES hsa-miR-193b-3p YES YES YES hsa-miR-19a-3p NO YES YES hsa-miR-19b-3p NO YES YES hsa-miR-200a-3p YES YES NO hsa-miR-215-5p YES YES YES hsa-miR-218-5p YES YES NO hsa-miR-23a-3p YES YES NO hsa-miR-23b-3p YES YES NO hsa-miR-26a-5p YES YES NO hsa-miR-26b-5p YES YES NO hsa-miR-28-5p YES YES NO hsa-miR-320a YES YES NO hsa-miR-320b YES YES NO hsa-miR-320c YES YES NO hsa-miR-320d YES YES NO hsa-miR-340-5p YES NO YES hsa-miR-365a-3p YES YES NO hsa-miR-370-3p YES YES YES hsa-miR-371a-5p YES YES NO hsa-miR-506-3p YES YES NO hsa-miR-708-5p YES YES NO hsa-miR-758-3p YES YES NO hsa-miR-9-5p YES YES YES hsa-miR-96-5p YES NO YES Display: