Entry Detail



General Information

Database ID:BRCA01002
Cancer Type:breast cancer
Dataset:GSE111065
CTCs/CTM Isolation Method:microfluidics immunofluorescence



Gene Information

ncRNA Symbol:CALR
Full Name:calreticulin
Category:mRNA
Synonyms:CRT|HEL-S-99n|RO|SSA|cC1qR
Chromosome:chr19
Strand:+
Coordinate:
Start Site(bp):12938578End Site(bp):12944489
Gene Summary:Calreticulin is a multifunctional protein that acts as a major Ca(2+)-binding (storage) protein in the lumen of the endoplasmic reticulum. It is also found in the nucleus, suggesting that it may have a role in transcription regulation. Calreticulin binds to the synthetic peptide KLGFFKR, which is almost identical to an amino acid sequence in the DNA-binding domain of the superfamily of nuclear receptors. Calreticulin binds to antibodies in certain sera of systemic lupus and Sjogren patients which contain anti-Ro/SSA antibodies, it is highly conserved among species, and it is located in the endoplasmic and sarcoplasmic reticulum where it may bind calcium. The amino terminus of calreticulin interacts with the DNA-binding domain of the glucocorticoid receptor and prevents the receptor from binding to its specific glucocorticoid response element. Calreticulin can inhibit the binding of androgen receptor to its hormone-responsive DNA element and can inhibit androgen receptor and retinoic acid receptor transcriptional activities in vivo, as well as retinoic acid-induced neuronal differentiation. Thus, calreticulin can act as an important modulator of the regulation of gene transcription by nuclear hormone receptors. Systemic lupus erythematosus is associated with increased autoantibody titers against calreticulin but calreticulin is not a Ro/SS-A antigen. Earlier papers referred to calreticulin as an Ro/SS-A antigen but this was later disproven. Increased autoantibody titer against human calreticulin is found in infants with complete congenital heart block of both the IgG and IgM classes. [provided by RefSeq, Jul 2008]
External Links:
Ensembl ID:ENSG00000179218
HGNC ID:HGNC:1455
Entrez Gene:811



Expression Profile of CALR Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-143-3p
YES
YES
NO
hsa-miR-148a-3p
YES
NO
YES
hsa-miR-148b-3p
YES
NO
YES
hsa-miR-152-3p
YES
NO
YES
hsa-miR-181a-5p
YES
NO
YES
hsa-miR-181b-5p
YES
NO
YES
hsa-miR-181c-5p
YES
NO
YES
hsa-miR-181d-5p
YES
NO
YES
hsa-miR-216a-5p
YES
YES
YES
hsa-miR-216b-5p
YES
NO
YES
hsa-miR-31-5p
YES
YES
NO
hsa-miR-455-3p
YES
NO
YES
hsa-miR-665
YES
NO
YES
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