ctcRbase

Entry Detail

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General Information

Database ID: BRCA01131 Cancer Type: breast cancer Dataset: GSE109761 CTCs/CTM Isolation Method: microfluidics immunofluorescence

Gene Information

ncRNA Symbol: HNRNPC Full Name: heterogeneous nuclear ribonucleoprotein C (C1/C2) Category: mRNA Synonyms: C1|C2|HNRNP|HNRPC|SNRPC Chromosome: chr14 Strand: - Coordinate: Start Site(bp): 21209136 End Site(bp): 21269494 Gene Summary: This gene belongs to the subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are RNA binding proteins and they complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and appear to influence pre-mRNA processing and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene can act as a tetramer and is involved in the assembly of 40S hnRNP particles. Multiple transcript variants encoding at least two different isoforms have been described for this gene. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000092199 HGNC ID: HGNC:5035 Entrez Gene: 3183

Expression Profile of HNRNPC Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES YES NO hsa-let-7b-5p YES YES NO hsa-let-7c-5p YES YES NO hsa-let-7d-5p YES YES NO hsa-let-7e-5p YES YES NO hsa-let-7f-5p YES YES NO hsa-let-7g-5p YES YES NO hsa-let-7i-5p YES YES NO hsa-miR-128-3p YES YES NO hsa-miR-141-3p YES YES NO hsa-miR-142-3p YES YES YES hsa-miR-143-3p YES YES NO hsa-miR-144-3p YES YES YES hsa-miR-145-5p YES YES NO hsa-miR-153-3p YES YES NO hsa-miR-185-5p YES YES NO hsa-miR-186-5p YES YES YES hsa-miR-200a-3p YES YES NO hsa-miR-208a-3p YES YES NO hsa-miR-208b-3p YES YES NO hsa-miR-218-5p NO YES YES hsa-miR-224-5p YES YES YES hsa-miR-28-5p YES YES YES hsa-miR-299-5p YES NO YES hsa-miR-300 YES YES NO hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES YES hsa-miR-320a YES YES YES hsa-miR-320b YES YES YES hsa-miR-320c YES YES YES hsa-miR-320d YES YES YES hsa-miR-330-3p YES NO YES hsa-miR-335-5p YES YES NO hsa-miR-361-5p YES YES NO hsa-miR-381-3p YES YES NO hsa-miR-411-5p YES YES NO hsa-miR-433-3p YES YES NO hsa-miR-455-5p NO YES YES hsa-miR-489-3p YES NO YES hsa-miR-495-3p YES YES NO hsa-miR-499a-5p YES YES YES hsa-miR-543 YES YES NO hsa-miR-653-5p YES YES NO hsa-miR-708-5p YES YES YES hsa-miR-873-5p YES YES NO hsa-miR-877-5p YES NO YES hsa-miR-98-5p YES YES NO Display: