ctcRbase

Entry Detail

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General Information

Database ID: BRCA01138 Cancer Type: breast cancer Dataset: GSE111065 CTCs/CTM Isolation Method: microfluidics immunofluorescence

Gene Information

ncRNA Symbol: SYNGR2 Full Name: synaptogyrin 2 Category: mRNA Synonyms: - Chromosome: chr17 Strand: + Coordinate: Start Site(bp): 78168558 End Site(bp): 78173527 Gene Summary: This gene encodes an integral membrane protein containing four transmembrane regions and a C-terminal cytoplasmic tail that is tyrosine phosphorylated. The exact function of this protein is unclear, but studies of a similar rat protein suggest that it may play a role in regulating membrane traffic in non-neuronal cells. The gene belongs to the synaptogyrin gene family. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2016] External Links: Ensembl ID: ENSG00000108639 HGNC ID: HGNC:11499 Entrez Gene: 9144

Expression Profile of SYNGR2 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-106a-5p YES YES NO hsa-miR-106b-5p YES YES NO hsa-miR-1271-5p YES NO YES hsa-miR-17-5p YES YES NO hsa-miR-182-5p YES NO YES hsa-miR-20a-5p YES YES NO hsa-miR-20b-5p YES YES NO hsa-miR-320a YES YES YES hsa-miR-320b YES YES YES hsa-miR-320c YES YES YES hsa-miR-320d YES YES YES hsa-miR-324-5p YES YES NO hsa-miR-374a-5p YES YES NO hsa-miR-374b-5p YES YES NO hsa-miR-519d-3p YES YES NO hsa-miR-874-3p YES YES NO hsa-miR-93-5p YES YES NO hsa-miR-9-5p YES NO YES hsa-miR-96-5p YES NO YES Display: