ctcRbase

Entry Detail

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General Information

Database ID: BRCA01143 Cancer Type: breast cancer Dataset: GSE109761 CTCs/CTM Isolation Method: microfluidics immunofluorescence

Gene Information

ncRNA Symbol: HNRNPA1 Full Name: heterogeneous nuclear ribonucleoprotein A1 Category: mRNA Synonyms: ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|UP 1|hnRNP A1|hnRNP-A1 Chromosome: chr12 Strand: + Coordinate: Start Site(bp): 54280193 End Site(bp): 54287088 Gene Summary: This gene encodes a member of a family of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs), which are RNA-binding proteins that associate with pre-mRNAs in the nucleus and influence pre-mRNA processing, as well as other aspects of mRNA metabolism and transport. The protein encoded by this gene is one of the most abundant core proteins of hnRNP complexes and plays a key role in the regulation of alternative splicing. Mutations in this gene have been observed in individuals with amyotrophic lateral sclerosis 20. Multiple alternatively spliced transcript variants have been found. There are numerous pseudogenes of this gene distributed throughout the genome. [provided by RefSeq, Feb 2016] External Links: Ensembl ID: ENSG00000135486 HGNC ID: HGNC:5031 Entrez Gene: 3178

Expression Profile of HNRNPA1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES YES NO hsa-miR-129-5p YES YES YES hsa-miR-135a-5p YES YES NO hsa-miR-135b-5p YES YES NO hsa-miR-137 YES YES NO hsa-miR-1-3p YES YES YES hsa-miR-149-5p YES YES YES hsa-miR-153-3p YES YES YES hsa-miR-15a-5p YES NO YES hsa-miR-15b-5p YES NO YES hsa-miR-16-5p YES NO YES hsa-miR-195-5p YES NO YES hsa-miR-19a-3p YES YES YES hsa-miR-19b-3p YES YES YES hsa-miR-204-5p YES YES NO hsa-miR-206 YES YES YES hsa-miR-211-5p YES YES NO hsa-miR-217 NO YES YES hsa-miR-218-5p YES YES YES hsa-miR-24-3p NO YES YES hsa-miR-25-3p YES YES NO hsa-miR-27a-3p NO YES NO hsa-miR-27b-3p NO YES NO hsa-miR-300 YES YES YES hsa-miR-32-5p YES YES NO hsa-miR-326 YES YES YES hsa-miR-330-5p YES YES YES hsa-miR-339-5p YES YES YES hsa-miR-34a-5p NO YES YES hsa-miR-34c-5p NO YES YES hsa-miR-363-3p YES YES NO hsa-miR-367-3p YES YES NO hsa-miR-370-3p YES NO YES hsa-miR-374a-5p YES YES NO hsa-miR-374b-5p YES YES NO hsa-miR-381-3p YES YES YES hsa-miR-383-5p YES YES YES hsa-miR-411-5p YES YES YES hsa-miR-421 YES YES YES hsa-miR-424-5p YES NO YES hsa-miR-448 YES YES NO hsa-miR-449a NO YES YES hsa-miR-449b-5p NO YES YES hsa-miR-455-5p YES YES NO hsa-miR-490-3p YES YES NO hsa-miR-496 YES YES YES hsa-miR-497-5p YES NO YES hsa-miR-503-5p YES NO YES hsa-miR-613 YES YES YES hsa-miR-668-3p YES NO YES hsa-miR-760 YES NO YES hsa-miR-92a-3p YES YES NO hsa-miR-92b-3p YES YES NO Display: