ctcRbase

Entry Detail

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General Information

Database ID: BRCA01211 Cancer Type: breast cancer Dataset: GSE75367 CTCs/CTM Isolation Method: micromanipulation immunofluorescence

Gene Information

ncRNA Symbol: SNX3 Full Name: sorting nexin 3 Category: mRNA Synonyms: Grd19|MCOPS8|SDP3 Chromosome: chr6 Strand: - Coordinate: Start Site(bp): 108211222 End Site(bp): 108261260 Gene Summary: This gene encodes a member of the sorting nexin family. Members of this family contain a phox (PX) domain, which is a phosphoinositide binding domain, and are involved in intracellular trafficking. This protein does not contain a coiled coil region, like most family members. This protein interacts with phosphatidylinositol-3-phosphate, and is involved in protein trafficking. A pseudogene of this gene is present on the sex chromosomes. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jul 2014] External Links: Ensembl ID: ENSG00000112335 HGNC ID: HGNC:11174 Entrez Gene: 8724

Expression Profile of SNX3 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-103a-3p YES YES YES hsa-miR-107 YES YES YES hsa-miR-129-5p YES YES NO hsa-miR-1323 YES NO NO hsa-miR-142-5p YES NO YES hsa-miR-19a-3p YES YES NO hsa-miR-19b-3p YES YES NO hsa-miR-33a-5p YES YES NO hsa-miR-33b-5p YES YES NO hsa-miR-340-5p YES YES YES hsa-miR-361-5p YES YES NO hsa-miR-410-3p YES YES NO hsa-miR-548o-3p YES NO NO hsa-miR-625-5p YES NO NO hsa-miR-876-5p YES YES NO Display: