ctcRbase

Entry Detail

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General Information

Database ID: BRCA01219 Cancer Type: breast cancer Dataset: GSE55807 CTCs/CTM Isolation Method: CTC-iChip

Gene Information

ncRNA Symbol: HMGN2 Full Name: high mobility group nucleosomal binding domain 2 Category: mRNA Synonyms: HMG17 Chromosome: chr1 Strand: + Coordinate: Start Site(bp): 26472450 End Site(bp): 26475972 Gene Summary: The protein encoded by this gene binds nucleosomal DNA and is associated with transcriptionally active chromatin. Along with a similar protein, HMGN1, the encoded protein may help maintain an open chromatin configuration around transcribable genes. The protein has also been found to have antimicrobial activity against bacteria, viruses and fungi. [provided by RefSeq, Oct 2014] External Links: Ensembl ID: ENSG00000198830 HGNC ID: HGNC:4986 Entrez Gene: 3151

Expression Profile of HMGN2 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-132-3p YES YES YES hsa-miR-144-3p YES YES YES hsa-miR-181b-5p YES YES NO hsa-miR-181d-5p YES YES NO hsa-miR-197-3p YES YES NO hsa-miR-204-5p YES YES NO hsa-miR-211-5p YES YES NO hsa-miR-212-3p YES YES YES hsa-miR-23a-3p YES YES YES hsa-miR-23b-3p YES YES YES hsa-miR-296-3p YES YES YES hsa-miR-300 YES YES YES hsa-miR-33a-5p YES YES NO hsa-miR-33b-5p YES YES NO hsa-miR-340-5p YES YES YES hsa-miR-371a-5p YES YES YES hsa-miR-376c-3p YES YES NO hsa-miR-381-3p YES YES YES hsa-miR-421 YES YES NO hsa-miR-489-3p YES NO YES hsa-miR-495-3p YES YES NO hsa-miR-873-5p YES YES NO Display: