ctcRbase

Entry Detail

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General Information

Database ID: BRCA01337 Cancer Type: breast cancer Dataset: GSE109761 CTCs/CTM Isolation Method: microfluidics immunofluorescence

Gene Information

ncRNA Symbol: CNBP Full Name: CCHC-type zinc finger nucleic acid binding protein Category: mRNA Synonyms: CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9 Chromosome: chr3 Strand: - Coordinate: Start Site(bp): 129169484 End Site(bp): 129183922 Gene Summary: This gene encodes a nucleic-acid binding protein with seven zinc-finger domains. The protein has a preference for binding single stranded DNA and RNA. The protein functions in cap-independent translation of ornithine decarboxylase mRNA, and may also function in sterol-mediated transcriptional regulation. A CCTG expansion from <30 repeats to 75-11000 repeats in the first intron of this gene results in myotonic dystrophy type 2. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2016] External Links: Ensembl ID: ENSG00000169714 HGNC ID: HGNC:13164 Entrez Gene: 7555

Expression Profile of CNBP Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-129-5p YES YES YES hsa-miR-141-3p YES YES NO hsa-miR-193a-3p YES YES YES hsa-miR-193b-3p YES YES YES hsa-miR-200a-3p YES YES NO hsa-miR-300 YES YES NO hsa-miR-320a YES NO YES hsa-miR-320b YES NO YES hsa-miR-320c YES NO YES hsa-miR-320d YES NO YES hsa-miR-326 YES YES YES hsa-miR-330-3p YES NO YES hsa-miR-330-5p YES YES YES hsa-miR-369-3p YES NO YES hsa-miR-376a-3p YES YES NO hsa-miR-376b-3p YES YES NO hsa-miR-381-3p YES YES NO hsa-miR-382-5p YES YES NO hsa-miR-423-5p YES NO YES hsa-miR-494-3p YES YES YES hsa-miR-495-3p YES YES YES hsa-miR-532-3p YES NO YES hsa-miR-655-3p YES NO YES Display: