ctcRbase

Entry Detail

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General Information

Database ID: BRCA04660 Cancer Type: breast cancer Dataset: GSE75367 CTCs/CTM Isolation Method: micromanipulation immunofluorescence

Gene Information

ncRNA Symbol: SON Full Name: SON DNA binding protein Category: mRNA Synonyms: BASS1|C21orf50|DBP-5|NREBP|SON3|TOKIMS Chromosome: chr21 Strand: + Coordinate: Start Site(bp): 33542618 End Site(bp): 33577481 Gene Summary: This gene encodes a protein that contains multiple simple repeats. The encoded protein binds RNA and promotes pre-mRNA splicing, particularly of transcripts with poor splice sites. The protein also recognizes a specific DNA sequence found in the human hepatitis B virus (HBV) and represses HBV core promoter activity. There is a pseudogene for this gene on chromosome 1. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013] External Links: Ensembl ID: ENSG00000159140 HGNC ID: HGNC:11183 Entrez Gene: 6651

Expression Profile of SON Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES YES NO hsa-miR-103a-3p YES YES NO hsa-miR-107 YES YES NO hsa-miR-10a-5p YES YES YES hsa-miR-10b-5p YES YES YES hsa-miR-129-2-3p YES NO YES hsa-miR-132-3p YES YES NO hsa-miR-136-5p NO YES YES hsa-miR-140-3p YES NO YES hsa-miR-141-3p YES YES YES hsa-miR-142-5p YES NO YES hsa-miR-143-3p YES YES NO hsa-miR-144-3p YES YES YES hsa-miR-15a-5p YES YES YES hsa-miR-15b-5p YES YES YES hsa-miR-16-5p YES YES YES hsa-miR-181a-5p YES YES NO hsa-miR-181b-5p YES YES NO hsa-miR-181c-5p YES YES NO hsa-miR-181d-5p YES YES NO hsa-miR-182-5p YES YES NO hsa-miR-18a-5p YES YES YES hsa-miR-18b-5p YES YES YES hsa-miR-193a-3p YES YES NO hsa-miR-193b-3p YES YES NO hsa-miR-195-5p YES YES YES hsa-miR-200a-3p YES YES YES hsa-miR-204-5p YES YES NO hsa-miR-205-5p YES YES NO hsa-miR-211-5p YES YES NO hsa-miR-212-3p YES YES NO hsa-miR-300 YES YES NO hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES YES hsa-miR-320a YES YES YES hsa-miR-320b YES YES YES hsa-miR-320c YES YES YES hsa-miR-320d YES YES YES hsa-miR-338-3p YES YES YES hsa-miR-339-5p YES YES NO hsa-miR-340-5p YES YES NO hsa-miR-361-5p YES YES NO hsa-miR-376a-3p YES YES NO hsa-miR-376b-3p YES YES NO hsa-miR-376c-3p YES YES NO hsa-miR-377-3p YES YES NO hsa-miR-381-3p YES YES NO hsa-miR-382-5p YES YES NO hsa-miR-410-3p YES YES NO hsa-miR-421 YES YES NO hsa-miR-424-5p YES YES YES hsa-miR-431-5p YES YES NO hsa-miR-452-5p YES NO YES hsa-miR-455-5p YES YES NO hsa-miR-483-3p YES NO YES hsa-miR-486-5p YES YES NO hsa-miR-495-3p YES YES NO hsa-miR-497-5p YES YES YES hsa-miR-503-5p YES YES NO hsa-miR-505-3p YES YES YES hsa-miR-532-5p YES NO YES hsa-miR-543 YES YES YES hsa-miR-758-3p YES YES NO hsa-miR-9-5p YES YES YES Display: