Entry Detail



General Information

Database ID:BRCA30453
Cancer Type:breast cancer
Dataset:GSE41245
CTCs/CTM Isolation Method:CTC-Chip



Gene Information

ncRNA Symbol:HSPG2
Full Name:heparan sulfate proteoglycan 2
Category:mRNA
Synonyms:HSPG|PLC|PRCAN|SJA|SJS|SJS1
Chromosome:chr1
Strand:-
Coordinate:
Start Site(bp):21822245End Site(bp):21937297
Gene Summary:This gene encodes the perlecan protein, which consists of a core protein to which three long chains of glycosaminoglycans (heparan sulfate or chondroitin sulfate) are attached. The perlecan protein is a large multidomain proteoglycan that binds to and cross-links many extracellular matrix components and cell-surface molecules. It has been shown that this protein interacts with laminin, prolargin, collagen type IV, FGFBP1, FBLN2, FGF7 and transthyretin, etc., and it plays essential roles in multiple biological activities. Perlecan is a key component of the vascular extracellular matrix, where it helps to maintain the endothelial barrier function. It is a potent inhibitor of smooth muscle cell proliferation and is thus thought to help maintain vascular homeostasis. It can also promote growth factor (e.g., FGF2) activity and thus stimulate endothelial growth and re-generation. It is a major component of basement membranes, where it is involved in the stabilization of other molecules as well as being involved with glomerular permeability to macromolecules and cell adhesion. Mutations in this gene cause Schwartz-Jampel syndrome type 1, Silverman-Handmaker type of dyssegmental dysplasia, and tardive dyskinesia. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, May 2014]
External Links:
Ensembl ID:ENSG00000142798
HGNC ID:HGNC:5273
Entrez Gene:3339



Expression Profile of HSPG2 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-124-3p
YES
YES
NO
hsa-miR-140-3p
YES
NO
YES
hsa-miR-146a-5p
YES
YES
NO
hsa-miR-146b-5p
YES
YES
NO
hsa-miR-15a-5p
YES
YES
YES
hsa-miR-15b-5p
YES
YES
YES
hsa-miR-16-5p
YES
YES
YES
hsa-miR-195-5p
YES
YES
YES
hsa-miR-22-3p
YES
YES
NO
hsa-miR-29a-3p
YES
YES
NO
hsa-miR-29b-3p
YES
YES
NO
hsa-miR-29c-3p
YES
YES
NO
hsa-miR-346
YES
YES
NO
hsa-miR-369-3p
YES
NO
NO
hsa-miR-424-5p
YES
YES
YES
hsa-miR-497-5p
YES
YES
YES
hsa-miR-506-3p
YES
YES
NO
hsa-miR-541-3p
YES
NO
NO
hsa-miR-654-5p
YES
NO
NO
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