Entry Detail



General Information

Database ID:BRCA31195
Cancer Type:breast cancer
Dataset:GSE109761
CTCs/CTM Isolation Method:microfluidics immunofluorescence



Gene Information

ncRNA Symbol:PDF
Full Name:peptide deformylase, mitochondrial
Category:mRNA
Synonyms:-
Chromosome:chr16
Strand:-
Coordinate:
Start Site(bp):69328621End Site(bp):69330595
Gene Summary:Protein synthesis proceeds after formylation of methionine by methionyl-tRNA formyl transferase (FMT) and transfer of the charged initiator f-met tRNA to the ribosome. In eubacteria and eukaryotic organelles the product of this gene, peptide deformylase (PDF), removes the formyl group from the initiating methionine of nascent peptides. In eubacteria, deformylation of nascent peptides is required for subsequent cleavage of initiating methionines by methionine aminopeptidase. The discovery that a natural inhibitor of PDF, actinonin, acts as an antimicrobial agent in some bacteria has spurred intensive research into the design of bacterial-specific PDF inhibitors. In human cells, only mitochondrial proteins have N-formylation of initiating methionines. Protein inhibitors of PDF or siRNAs of PDF block the growth of cancer cell lines but have no effect on normal cell growth. In humans, PDF function may therefore be restricted to rapidly growing cells. [provided by RefSeq, Nov 2008]
External Links:
Ensembl ID:ENSG00000258429
HGNC ID:HGNC:30012
Entrez Gene:64146



Expression Profile of PDF Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-145-5p
YES
YES
NO
hsa-miR-182-5p
YES
YES
NO
hsa-miR-187-3p
YES
YES
NO
hsa-miR-205-5p
YES
YES
NO
hsa-miR-346
YES
YES
NO
hsa-miR-370-3p
YES
YES
YES
hsa-miR-382-5p
YES
YES
NO
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