ctcRbase

Entry Detail

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General Information

Database ID: BRCA37298 Cancer Type: breast cancer Dataset: GSE41245 CTCs/CTM Isolation Method: CTC-Chip

Gene Information

ncRNA Symbol: PDPN Full Name: podoplanin Category: mRNA Synonyms: AGGRUS|GP36|GP40|Gp38|HT1A-1|OTS8|PA2.26|T1A|T1A-2|T1A2|TI1A Chromosome: chr1 Strand: + Coordinate: Start Site(bp): 13583465 End Site(bp): 13617957 Gene Summary: This gene encodes a type-I integral membrane glycoprotein with diverse distribution in human tissues. The physiological function of this protein may be related to its mucin-type character. The homologous protein in other species has been described as a differentiation antigen and influenza-virus receptor. The specific function of this protein has not been determined but it has been proposed as a marker of lung injury. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000162493 HGNC ID: HGNC:29602 Entrez Gene: 10630

Expression Profile of PDPN Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-208a-3p YES YES NO hsa-miR-208b-3p YES YES NO hsa-miR-217 YES YES YES hsa-miR-29a-3p YES YES NO hsa-miR-29b-3p YES YES NO hsa-miR-29c-3p YES YES NO hsa-miR-33a-5p YES YES YES hsa-miR-33b-5p YES YES YES hsa-miR-499a-5p YES YES NO hsa-miR-532-3p YES NO YES Display: