ctcRbase

Entry Detail

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General Information

Database ID: BRCA39100 Cancer Type: breast cancer Dataset: GSE41245 CTCs/CTM Isolation Method: CTC-Chip

Gene Information

ncRNA Symbol: PODXL Full Name: podocalyxin like Category: mRNA Synonyms: Gp200|PC|PCLP|PCLP-1 Chromosome: chr7 Strand: - Coordinate: Start Site(bp): 131500262 End Site(bp): 131558217 Gene Summary: This gene encodes a member of the sialomucin protein family. The encoded protein was originally identified as an important component of glomerular podocytes. Podocytes are highly differentiated epithelial cells with interdigitating foot processes covering the outer aspect of the glomerular basement membrane. Other biological activities of the encoded protein include: binding in a membrane protein complex with Na+/H+ exchanger regulatory factor to intracellular cytoskeletal elements, playing a role in hematopoetic cell differentiation, and being expressed in vascular endothelium cells and binding to L-selectin. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000128567 HGNC ID: HGNC:9171 Entrez Gene: 5420

Expression Profile of PODXL Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-100-5p YES YES NO hsa-miR-125a-5p YES YES YES hsa-miR-125b-5p YES YES YES hsa-miR-1323 YES NO NO hsa-miR-139-5p YES YES NO hsa-miR-140-5p YES YES NO hsa-miR-143-3p YES NO YES hsa-miR-144-3p YES YES YES hsa-miR-145-5p YES NO YES hsa-miR-148a-3p YES NO YES hsa-miR-148b-3p YES NO YES hsa-miR-152-3p YES NO YES hsa-miR-155-5p YES YES NO hsa-miR-15a-5p YES NO YES hsa-miR-15b-5p YES NO YES hsa-miR-16-5p YES NO YES hsa-miR-181a-5p YES NO YES hsa-miR-181b-5p YES NO YES hsa-miR-181c-5p YES NO YES hsa-miR-181d-5p YES NO YES hsa-miR-195-5p YES NO YES hsa-miR-199a-5p YES YES YES hsa-miR-199b-5p YES YES YES hsa-miR-205-5p YES YES NO hsa-miR-219a-5p YES NO YES hsa-miR-339-5p YES NO YES hsa-miR-340-5p YES YES NO hsa-miR-34a-5p YES YES YES hsa-miR-34c-5p YES YES YES hsa-miR-424-5p YES NO YES hsa-miR-449a YES YES YES hsa-miR-449b-5p YES YES YES hsa-miR-495-3p YES NO NO hsa-miR-497-5p YES NO YES hsa-miR-543 YES NO YES hsa-miR-548o-3p YES NO NO hsa-miR-599 YES YES NO hsa-miR-99a-5p YES YES NO hsa-miR-99b-5p YES YES NO Display: