ctcRbase

Entry Detail

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General Information

Database ID: BRCA39384 Cancer Type: breast cancer Dataset: GSE41245 CTCs/CTM Isolation Method: CTC-Chip

Gene Information

ncRNA Symbol: SYNPO Full Name: synaptopodin Category: mRNA Synonyms: - Chromosome: chr5 Strand: + Coordinate: Start Site(bp): 150601080 End Site(bp): 150659220 Gene Summary: Synaptopodin is an actin-associated protein that may play a role in actin-based cell shape and motility. The name synaptopodin derives from the protein's associations with postsynaptic densities and dendritic spines and with renal podocytes (Mundel et al., 1997 [PubMed 9314539]).[supplied by OMIM, Mar 2008] External Links: Ensembl ID: ENSG00000171992 HGNC ID: HGNC:30672 Entrez Gene: 11346

Expression Profile of SYNPO Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-124-3p YES YES NO hsa-miR-146a-5p YES NO YES hsa-miR-146b-5p YES NO YES hsa-miR-147a YES NO NO hsa-miR-214-3p YES YES NO hsa-miR-28-5p YES NO YES hsa-miR-34a-5p YES NO YES hsa-miR-34c-5p YES NO YES hsa-miR-449a YES NO YES hsa-miR-449b-5p YES NO YES hsa-miR-503-5p YES YES NO hsa-miR-506-3p YES YES NO hsa-miR-708-5p YES NO YES hsa-miR-9-5p YES YES NO Display: