Entry Detail



General Information

Database ID:BRCA43936
Cancer Type:breast cancer
Dataset:GSE41245
CTCs/CTM Isolation Method:CTC-Chip



Gene Information

ncRNA Symbol:COL18A1
Full Name:collagen type XVIII alpha 1 chain
Category:mRNA
Synonyms:KNO|KNO1|KS
Chromosome:chr21
Strand:+
Coordinate:
Start Site(bp):45405137End Site(bp):45513720
Gene Summary:This gene encodes the alpha chain of type XVIII collagen. This collagen is one of the multiplexins, extracellular matrix proteins that contain multiple triple-helix domains (collagenous domains) interrupted by non-collagenous domains. A long isoform of the protein has an N-terminal domain that is homologous to the extracellular part of frizzled receptors. Proteolytic processing at several endogenous cleavage sites in the C-terminal domain results in production of endostatin, a potent antiangiogenic protein that is able to inhibit angiogenesis and tumor growth. Mutations in this gene are associated with Knobloch syndrome. The main features of this syndrome involve retinal abnormalities, so type XVIII collagen may play an important role in retinal structure and in neural tube closure. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2014]
External Links:
Ensembl ID:ENSG00000182871
HGNC ID:HGNC:2195
Entrez Gene:80781



Expression Profile of COL18A1 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-134-5p
YES
YES
NO
hsa-miR-143-3p
YES
YES
NO
hsa-miR-377-3p
YES
YES
NO
hsa-miR-384
YES
YES
NO
hsa-miR-9-5p
YES
YES
YES
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