ctcRbase

Entry Detail

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General Information

Database ID: BRCA46200 Cancer Type: breast cancer Dataset: GSE55807 CTCs/CTM Isolation Method: CTC-iChip

Gene Information

ncRNA Symbol: SIX5 Full Name: SIX homeobox 5 Category: mRNA Synonyms: BOR2|DMAHP Chromosome: chr19 Strand: - Coordinate: Start Site(bp): 45764785 End Site(bp): 45769226 Gene Summary: The protein encoded by this gene is a homeodomain-containing transcription factor that appears to function in the regulation of organogenesis. This gene is located downstream of the dystrophia myotonica-protein kinase gene. Mutations in this gene are a cause of branchiootorenal syndrome type 2. [provided by RefSeq, Jul 2009] External Links: Ensembl ID: ENSG00000177045 HGNC ID: HGNC:10891 Entrez Gene: 147912

Expression Profile of SIX5 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-125a-5p YES YES NO hsa-miR-125b-5p YES YES NO hsa-miR-133a-3p YES NO YES hsa-miR-133b YES NO YES hsa-miR-138-5p YES YES NO hsa-miR-27a-3p NO YES YES hsa-miR-27b-3p NO YES YES hsa-miR-29a-3p YES YES YES hsa-miR-29b-3p YES YES YES hsa-miR-29c-3p YES YES YES hsa-miR-542-3p YES YES NO hsa-miR-758-3p YES YES NO hsa-miR-9-5p YES YES YES Display: