ctcRbase

Entry Detail

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General Information

Database ID: PAAD00230 Cancer Type: pancreatic cancer Dataset: GSE40174 CTCs/CTM Isolation Method: TCGA-Chip

Gene Information

ncRNA Symbol: CAPN5 Full Name: calpain 5 Category: mRNA Synonyms: ADNIV|HTRA3|VRNI|nCL-3 Chromosome: chr11 Strand: + Coordinate: Start Site(bp): 77066932 End Site(bp): 77126155 Gene Summary: Calpains are calcium-dependent cysteine proteases involved in signal transduction in a variety of cellular processes. A functional calpain protein consists of an invariant small subunit and 1 of a family of large subunits. CAPN5 is one of the large subunits. Unlike some of the calpains, CAPN5 and CAPN6 lack a calmodulin-like domain IV. Because of the significant similarity to Caenorhabditis elegans sex determination gene tra-3, CAPN5 is also called as HTRA3. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000149260 HGNC ID: HGNC:1482 Entrez Gene: 726

Expression Profile of CAPN5 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-214-3p YES YES NO hsa-miR-216a-5p YES YES YES hsa-miR-216b-5p YES NO YES hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES YES hsa-miR-34a-5p YES NO YES hsa-miR-34c-5p YES NO YES hsa-miR-377-3p YES NO YES hsa-miR-449a YES NO YES hsa-miR-449b-5p YES NO YES hsa-miR-455-5p YES YES NO hsa-miR-485-5p YES YES NO hsa-miR-489-3p YES NO YES hsa-miR-491-5p YES YES NO hsa-miR-542-3p YES YES NO Display: