Entry Detail



General Information

Database ID:PRAD05869
Cancer Type:prostate cancer
Dataset:GSE104209
CTCs/CTM Isolation Method:CTC-iChip



Gene Information

ncRNA Symbol:IKZF1
Full Name:IKAROS family zinc finger 1
Category:mRNA
Synonyms:CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1
Chromosome:chr7
Strand:+
Coordinate:
Start Site(bp):50304124End Site(bp):50405101
Gene Summary:This gene encodes a transcription factor that belongs to the family of zinc-finger DNA-binding proteins associated with chromatin remodeling. The expression of this protein is restricted to the fetal and adult hemo-lymphopoietic system, and it functions as a regulator of lymphocyte differentiation. Several alternatively spliced transcript variants encoding different isoforms have been described for this gene. Most isoforms share a common C-terminal domain, which contains two zinc finger motifs that are required for hetero- or homo-dimerization, and for interactions with other proteins. The isoforms, however, differ in the number of N-terminal zinc finger motifs that bind DNA and in nuclear localization signal presence, resulting in members with and without DNA-binding properties. Only a few isoforms contain the requisite three or more N-terminal zinc motifs that confer high affinity binding to a specific core DNA sequence element in the promoters of target genes. The non-DNA-binding isoforms are largely found in the cytoplasm, and are thought to function as dominant-negative factors. Overexpression of some dominant-negative isoforms have been associated with B-cell malignancies, such as acute lymphoblastic leukemia (ALL). [provided by RefSeq, May 2014]
External Links:
Ensembl ID:ENSG00000185811
HGNC ID:HGNC:13176
Entrez Gene:10320



Expression Profile of IKZF1 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-153-3p
YES
NO
YES
hsa-miR-186-5p
YES
YES
NO
hsa-miR-19a-3p
YES
YES
YES
hsa-miR-19b-3p
YES
YES
YES
hsa-miR-27a-3p
YES
NO
YES
hsa-miR-27b-3p
YES
NO
YES
hsa-miR-329-3p
YES
NO
NO
hsa-miR-34a-5p
YES
YES
YES
hsa-miR-34c-5p
YES
YES
YES
hsa-miR-362-3p
YES
NO
NO
hsa-miR-448
YES
YES
YES
hsa-miR-449a
YES
YES
YES
hsa-miR-449b-5p
YES
YES
YES
hsa-miR-542-3p
YES
YES
NO
hsa-miR-582-5p
YES
NO
YES
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