ctcRbase

Entry Detail

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General Information

Database ID: PRAD06486 Cancer Type: prostate cancer Dataset: GSE104209 CTCs/CTM Isolation Method: CTC-iChip

Gene Information

ncRNA Symbol: SPTBN1 Full Name: spectrin beta, non-erythrocytic 1 Category: mRNA Synonyms: ELF|HEL102|SPTB2|betaSpII Chromosome: chr2 Strand: + Coordinate: Start Site(bp): 54456285 End Site(bp): 54671445 Gene Summary: Spectrin is an actin crosslinking and molecular scaffold protein that links the plasma membrane to the actin cytoskeleton, and functions in the determination of cell shape, arrangement of transmembrane proteins, and organization of organelles. It is composed of two antiparallel dimers of alpha- and beta- subunits. This gene is one member of a family of beta-spectrin genes. The encoded protein contains an N-terminal actin-binding domain, and 17 spectrin repeats which are involved in dimer formation. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000115306 HGNC ID: HGNC:11275 Entrez Gene: 6711

Expression Profile of SPTBN1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-106a-5p YES YES NO hsa-miR-106b-5p YES YES NO hsa-miR-1224-5p YES NO YES hsa-miR-128-3p YES YES YES hsa-miR-1297 YES YES YES hsa-miR-1298-5p YES NO YES hsa-miR-130a-3p YES YES NO hsa-miR-130b-3p YES YES NO hsa-miR-132-3p YES YES NO hsa-miR-133a-3p YES NO YES hsa-miR-133b YES NO YES hsa-miR-135a-5p YES YES YES hsa-miR-135b-5p YES YES YES hsa-miR-138-5p YES YES NO hsa-miR-139-5p YES YES YES hsa-miR-142-5p YES NO YES hsa-miR-144-3p YES YES NO hsa-miR-152-3p YES YES NO hsa-miR-153-3p YES NO YES hsa-miR-17-5p YES YES NO hsa-miR-185-5p YES YES NO hsa-miR-200b-3p YES YES NO hsa-miR-200c-3p YES YES NO hsa-miR-204-5p YES YES NO hsa-miR-20a-5p YES YES NO hsa-miR-20b-5p YES YES NO hsa-miR-211-5p YES YES NO hsa-miR-212-3p YES YES NO hsa-miR-218-5p YES YES YES hsa-miR-219a-5p YES YES YES hsa-miR-26a-5p YES YES YES hsa-miR-26b-5p YES YES YES hsa-miR-27a-3p YES YES NO hsa-miR-27b-3p YES YES NO hsa-miR-28-3p YES NO YES hsa-miR-296-3p YES YES NO hsa-miR-300 YES YES NO hsa-miR-301a-3p YES YES NO hsa-miR-301b-3p YES YES NO hsa-miR-320a YES YES NO hsa-miR-320b YES YES NO hsa-miR-320c YES YES NO hsa-miR-320d YES YES NO hsa-miR-323a-3p YES NO YES hsa-miR-342-3p YES YES NO hsa-miR-361-5p YES YES NO hsa-miR-370-3p YES YES NO hsa-miR-371a-5p YES YES YES hsa-miR-374a-5p YES YES NO hsa-miR-374b-5p YES YES NO hsa-miR-376c-3p YES YES NO hsa-miR-381-3p YES YES NO hsa-miR-425-5p YES YES NO hsa-miR-429 YES YES NO hsa-miR-454-3p YES YES NO hsa-miR-485-5p YES YES NO hsa-miR-495-3p YES YES NO hsa-miR-505-3p YES YES NO hsa-miR-519d-3p YES YES NO hsa-miR-520f-3p YES NO YES hsa-miR-542-3p YES YES YES hsa-miR-582-5p YES NO YES hsa-miR-876-5p YES YES NO hsa-miR-93-5p YES YES NO Display: