ctcRbase

Entry Detail

---



General Information

Database ID: PRAD06544 Cancer Type: prostate cancer Dataset: GSE104209 CTCs/CTM Isolation Method: CTC-iChip

Gene Information

ncRNA Symbol: TBC1D20 Full Name: TBC1 domain family member 20 Category: mRNA Synonyms: C20orf140|WARBM4 Chromosome: chr20 Strand: - Coordinate: Start Site(bp): 435480 End Site(bp): 462553 Gene Summary: This gene encodes a protein that belongs to a family of GTPase activator proteins of Rab-like small GTPases. The encoded protein and its cognate GTPase, Rab1, bind the nonstructural protein 5A (NS5A) of the hepatitis C virus (HCV) to mediate viral replication. Depletion of this protein inhibits replication of the virus and HCV infection. Mutations in this gene are associated with Warburg micro syndrome 4. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2014] External Links: Ensembl ID: ENSG00000125875 HGNC ID: HGNC:16133 Entrez Gene: 128637

Expression Profile of TBC1D20 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-106a-5p YES YES YES hsa-miR-106b-5p YES YES YES hsa-miR-122-5p YES YES NO hsa-miR-124-3p YES YES YES hsa-miR-1297 YES YES NO hsa-miR-135a-5p YES NO YES hsa-miR-135b-5p YES NO YES hsa-miR-145-5p YES YES NO hsa-miR-146a-5p YES YES YES hsa-miR-146b-5p YES YES YES hsa-miR-155-5p YES YES NO hsa-miR-15a-5p YES YES YES hsa-miR-15b-5p YES YES YES hsa-miR-16-5p YES YES YES hsa-miR-17-5p YES YES YES hsa-miR-184 YES YES NO hsa-miR-185-5p YES NO YES hsa-miR-195-5p YES YES YES hsa-miR-20a-5p YES YES YES hsa-miR-20b-5p YES YES YES hsa-miR-26a-5p YES YES NO hsa-miR-300 YES YES NO hsa-miR-302a-3p YES YES YES hsa-miR-302b-3p YES YES YES hsa-miR-302c-3p YES YES YES hsa-miR-302d-3p YES YES YES hsa-miR-302e YES YES YES hsa-miR-30a-5p YES YES NO hsa-miR-30b-5p YES YES NO hsa-miR-30c-5p YES YES NO hsa-miR-30d-5p YES YES NO hsa-miR-30e-5p YES YES NO hsa-miR-320a YES YES NO hsa-miR-320b YES YES NO hsa-miR-320c YES YES NO hsa-miR-320d YES YES NO hsa-miR-372-3p YES YES YES hsa-miR-373-3p YES YES YES hsa-miR-381-3p YES YES NO hsa-miR-424-5p YES YES YES hsa-miR-490-3p YES YES YES hsa-miR-493-3p YES NO YES hsa-miR-495-3p YES YES NO hsa-miR-497-5p YES YES YES hsa-miR-506-3p YES YES NO hsa-miR-519d-3p YES YES YES hsa-miR-520a-3p YES YES YES hsa-miR-520b YES YES YES hsa-miR-520c-3p YES YES YES hsa-miR-520d-3p YES YES YES hsa-miR-520e YES YES YES hsa-miR-520f-3p YES NO YES hsa-miR-543 YES YES NO hsa-miR-760 YES NO YES hsa-miR-873-5p YES YES NO hsa-miR-874-3p YES YES NO hsa-miR-93-5p YES YES YES Display: