Entry Detail



General Information

Database ID:PRAD07087
Cancer Type:prostate cancer
Dataset:GSE104209
CTCs/CTM Isolation Method:CTC-iChip



Gene Information

ncRNA Symbol:HTT
Full Name:huntingtin
Category:mRNA
Synonyms:HD|IT15|LOMARS
Chromosome:chr4
Strand:+
Coordinate:
Start Site(bp):3074681End Site(bp):3243959
Gene Summary:Huntingtin is a disease gene linked to Huntington's disease, a neurodegenerative disorder characterized by loss of striatal neurons. This is thought to be caused by an expanded, unstable trinucleotide repeat in the huntingtin gene, which translates as a polyglutamine repeat in the protein product. A fairly broad range of trinucleotide repeats (9-35) has been identified in normal controls, and repeat numbers in excess of 40 have been described as pathological. The huntingtin locus is large, spanning 180 kb and consisting of 67 exons. The huntingtin gene is widely expressed and is required for normal development. It is expressed as 2 alternatively polyadenylated forms displaying different relative abundance in various fetal and adult tissues. The larger transcript is approximately 13.7 kb and is expressed predominantly in adult and fetal brain whereas the smaller transcript of approximately 10.3 kb is more widely expressed. The genetic defect leading to Huntington's disease may not necessarily eliminate transcription, but may confer a new property on the mRNA or alter the function of the protein. One candidate is the huntingtin-associated protein-1, highly expressed in brain, which has increased affinity for huntingtin protein with expanded polyglutamine repeats. This gene contains an upstream open reading frame in the 5' UTR that inhibits expression of the huntingtin gene product through translational repression. [provided by RefSeq, Jul 2016]
External Links:
Ensembl ID:ENSG00000197386
HGNC ID:HGNC:4851
Entrez Gene:3064



Expression Profile of HTT Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-103a-3p
YES
NO
YES
hsa-miR-107
YES
NO
YES
hsa-miR-10a-5p
YES
NO
YES
hsa-miR-10b-5p
YES
NO
YES
hsa-miR-128-3p
YES
YES
YES
hsa-miR-137
YES
NO
YES
hsa-miR-146a-5p
YES
YES
NO
hsa-miR-146b-5p
YES
YES
NO
hsa-miR-147a
YES
NO
NO
hsa-miR-181a-5p
YES
YES
YES
hsa-miR-181b-5p
YES
YES
YES
hsa-miR-181c-5p
YES
YES
YES
hsa-miR-181d-5p
YES
YES
YES
hsa-miR-214-3p
YES
YES
NO
hsa-miR-216a-5p
YES
NO
YES
hsa-miR-216b-5p
YES
YES
YES
hsa-miR-27a-3p
YES
YES
YES
hsa-miR-27b-3p
YES
YES
YES
hsa-miR-30a-5p
YES
YES
NO
hsa-miR-30b-5p
YES
YES
NO
hsa-miR-30c-5p
YES
YES
NO
hsa-miR-30d-5p
YES
YES
NO
hsa-miR-30e-5p
YES
YES
NO
hsa-miR-7-5p
YES
YES
NO
hsa-miR-873-5p
YES
YES
NO
Display: