ctcRbase

Entry Detail

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General Information

Database ID: SKCM00429 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: LSM8 Full Name: LSM8 homolog, U6 small nuclear RNA associated Category: mRNA Synonyms: NAA38 Chromosome: chr7 Strand: + Coordinate: Start Site(bp): 118184032 End Site(bp): 118192824 Gene Summary: This gene encodes a member of the like-Sm family of proteins. The encoded protein consists of a closed barrel shape, made up of five anti-parallel beta strands and an alpha helix. This protein partners with six paralogs to form a heteroheptameric ring which transiently binds U6 small nuclear RNAs and is involved in the general maturation of RNA in the nucleus. [provided by RefSeq, Jan 2010] External Links: Ensembl ID: ENSG00000128534 HGNC ID: HGNC:20471 Entrez Gene: 51691

Expression Profile of LSM8 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-1297 YES YES NO hsa-miR-136-5p YES YES NO hsa-miR-23a-3p YES YES YES hsa-miR-23b-3p YES YES YES hsa-miR-26a-5p YES YES NO hsa-miR-26b-5p YES YES NO hsa-miR-340-5p YES YES NO hsa-miR-342-3p YES YES NO hsa-miR-365a-3p YES YES NO hsa-miR-377-3p YES YES NO hsa-miR-486-5p YES YES NO Display: