ctcRbase

Entry Detail

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General Information

Database ID: SKCM01029 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SS18L2 Full Name: SS18 like 2 Category: mRNA Synonyms: KIAA-iso Chromosome: chr3 Strand: + Coordinate: Start Site(bp): 42581840 End Site(bp): 42595114 Gene Summary: Synovial sarcomas occur most frequently in the extremities around large joints. More than 90% of cases have a recurrent and specific chromosomal translocation, t(X;18)(p11.2;q11.2), in which the 5-prime end of the SS18 gene (MIM 600192) is fused in-frame to the 3-prime end of the SSX1 (MIM 312820), SSX2 (MIM 300192), or SSX4 (MIM 300326) gene. The SS18L2 gene is homologous to SS18.[supplied by OMIM, Jul 2002] External Links: Ensembl ID: ENSG00000008324 HGNC ID: HGNC:15593 Entrez Gene: 51188

Expression Profile of SS18L2 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-10a-5p YES YES NO hsa-miR-10b-5p YES YES NO hsa-miR-136-5p YES YES YES hsa-miR-181a-5p YES YES NO hsa-miR-181b-5p YES YES NO hsa-miR-181c-5p YES YES NO hsa-miR-181d-5p YES YES NO hsa-miR-216a-5p YES YES NO hsa-miR-23a-3p YES YES YES hsa-miR-23b-3p YES YES YES hsa-miR-330-3p YES NO YES hsa-miR-339-5p YES YES NO hsa-miR-7-5p YES NO YES hsa-miR-873-5p YES YES NO hsa-miR-876-5p YES YES NO Display: