ctcRbase

Entry Detail

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General Information

Database ID: SKCM01104 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SPTSSA Full Name: serine palmitoyltransferase small subunit A Category: mRNA Synonyms: C14orf147|SSSPTA Chromosome: chr14 Strand: - Coordinate: Start Site(bp): 34432789 End Site(bp): 34462356 Gene Summary: Serine palmitoyltransferase (SPT; EC 2.3.1.50) catalyzes the first committed and rate-limiting step in sphingolipid biosynthesis. SSSPTA is a small SPT subunit that stimulates SPT activity and confers acyl-CoA preference to the SPT catalytic heterodimer of SPTLC1 (MIM 605712) and either SPTLC2 (MIM 605713) or SPTLC3 (MIM 611120) (Han et al., 2009 [PubMed 19416851]).[supplied by OMIM, Nov 2010] External Links: Ensembl ID: ENSG00000165389 HGNC ID: HGNC:20361 Entrez Gene: 171546

Expression Profile of SPTSSA Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-124-3p YES YES NO hsa-miR-129-5p YES YES YES hsa-miR-132-3p YES YES YES hsa-miR-133a-3p YES YES YES hsa-miR-133b YES YES YES hsa-miR-155-5p YES YES YES hsa-miR-186-5p YES YES YES hsa-miR-18a-5p YES YES NO hsa-miR-18b-5p YES YES NO hsa-miR-196a-5p YES YES YES hsa-miR-196b-5p YES YES YES hsa-miR-19a-3p YES YES YES hsa-miR-19b-3p YES YES YES hsa-miR-200b-3p YES YES YES hsa-miR-200c-3p YES YES YES hsa-miR-212-3p YES YES YES hsa-miR-221-3p YES YES YES hsa-miR-222-3p YES YES YES hsa-miR-300 YES YES YES hsa-miR-320a YES YES YES hsa-miR-320b YES YES YES hsa-miR-320c YES YES YES hsa-miR-320d YES YES YES hsa-miR-323a-3p YES NO YES hsa-miR-335-5p YES YES YES hsa-miR-371a-5p YES YES NO hsa-miR-381-3p YES YES YES hsa-miR-411-5p YES YES NO hsa-miR-429 YES YES YES hsa-miR-433-3p YES YES NO hsa-miR-488-3p YES YES YES hsa-miR-489-3p YES NO YES hsa-miR-494-3p YES YES YES hsa-miR-506-3p YES YES NO hsa-miR-653-5p YES YES NO hsa-miR-876-5p YES YES NO hsa-miR-9-5p YES YES YES Display: