ctcRbase

Entry Detail

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General Information

Database ID: SKCM01345 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SEC22B Full Name: SEC22 homolog B, vesicle trafficking protein (gene/pseudogene) Category: mRNA Synonyms: ERS-24|SEC22L1 Chromosome: chr1 Strand: - Coordinate: Start Site(bp): 120150898 End Site(bp): 120176515 Gene Summary: The protein encoded by this gene is a member of the SEC22 family of vesicle trafficking proteins. It seems to complex with SNARE and it is thought to play a role in the ER-Golgi protein trafficking. This protein has strong similarity to Mus musculus and Cricetulus griseus proteins.[provided by RefSeq, Sep 2009] External Links: Ensembl ID: ENSG00000265808 HGNC ID: HGNC:10700 Entrez Gene: 9554

Expression Profile of SEC22B Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-122-5p YES YES NO hsa-miR-124-3p YES YES NO hsa-miR-1271-5p YES YES NO hsa-miR-135a-5p YES YES NO hsa-miR-135b-5p YES YES NO hsa-miR-139-5p YES YES NO hsa-miR-1-3p YES YES NO hsa-miR-197-3p YES YES NO hsa-miR-19a-3p YES YES NO hsa-miR-19b-3p YES YES NO hsa-miR-206 YES YES NO hsa-miR-216a-5p YES YES NO hsa-miR-296-3p YES YES NO hsa-miR-320a YES YES NO hsa-miR-320b YES YES NO hsa-miR-320c YES YES NO hsa-miR-320d YES YES NO hsa-miR-340-5p YES YES NO hsa-miR-365a-3p YES YES NO hsa-miR-376c-3p YES YES NO hsa-miR-494-3p YES YES NO hsa-miR-495-3p YES YES NO hsa-miR-506-3p YES YES NO hsa-miR-613 YES YES NO hsa-miR-653-5p YES YES NO hsa-miR-96-5p YES YES NO Display: