ctcRbase

Entry Detail

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General Information

Database ID: SKCM01587 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: TSNAX Full Name: translin associated factor X Category: mRNA Synonyms: TRAX Chromosome: chr1 Strand: + Coordinate: Start Site(bp): 231528653 End Site(bp): 231566524 Gene Summary: This gene encodes a protein which specifically interacts with translin, a DNA-binding protein that binds consensus sequences at breakpoint junctions of chromosomal translocations. The encoded protein contains bipartite nuclear targeting sequences that may provide nuclear transport for translin, which lacks any nuclear targeting motifs. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000116918 HGNC ID: HGNC:12380 Entrez Gene: 7257

Expression Profile of TSNAX Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-1271-5p YES YES NO hsa-miR-135a-5p YES YES NO hsa-miR-135b-5p YES YES NO hsa-miR-137 YES YES YES hsa-miR-154-5p YES YES NO hsa-miR-182-5p YES YES YES hsa-miR-183-5p YES YES NO hsa-miR-186-5p YES YES NO hsa-miR-200b-3p YES YES NO hsa-miR-200c-3p YES YES NO hsa-miR-21-5p YES YES NO hsa-miR-219a-2-3p YES NO YES hsa-miR-23a-3p YES YES NO hsa-miR-23b-3p YES YES NO hsa-miR-340-5p YES YES NO hsa-miR-361-5p YES YES NO hsa-miR-374a-5p YES YES NO hsa-miR-374b-5p YES YES NO hsa-miR-375 YES YES NO hsa-miR-410-3p YES YES NO hsa-miR-429 YES YES NO hsa-miR-431-5p YES YES NO hsa-miR-433-3p YES YES NO hsa-miR-590-5p YES YES NO hsa-miR-9-5p YES YES YES hsa-miR-96-5p YES YES NO Display: