ctcRbase

Entry Detail

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General Information

Database ID: SKCM01743 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SYNCRIP Full Name: synaptotagmin binding cytoplasmic RNA interacting protein Category: mRNA Synonyms: GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q Chromosome: chr6 Strand: - Coordinate: Start Site(bp): 85607785 End Site(bp): 85643792 Gene Summary: This gene encodes a member of the cellular heterogeneous nuclear ribonucleoprotein (hnRNP) family. hnRNPs are RNA binding proteins that complex with heterogeneous nuclear RNA (hnRNA) and regulate alternative splicing, polyadenylation, and other aspects of mRNA metabolism and transport. The encoded protein plays a role in multiple aspects of mRNA maturation and is associated with several multiprotein complexes including the apoB RNA editing-complex and survival of motor neurons (SMN) complex. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene, and a pseudogene of this gene is located on the short arm of chromosome 20. [provided by RefSeq, Dec 2011] External Links: Ensembl ID: ENSG00000135316 HGNC ID: HGNC:16918 Entrez Gene: 10492

Expression Profile of SYNCRIP Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p NO YES YES hsa-let-7b-5p NO YES YES hsa-let-7c-5p NO YES YES hsa-let-7d-5p NO YES YES hsa-let-7e-5p NO YES YES hsa-let-7f-5p NO YES YES hsa-let-7g-5p NO YES YES hsa-let-7i-5p NO YES YES hsa-miR-101-3p NO YES YES hsa-miR-124-3p NO YES YES hsa-miR-1297 NO YES YES hsa-miR-130a-3p NO YES YES hsa-miR-130b-3p NO YES YES hsa-miR-135a-5p NO YES YES hsa-miR-135b-5p NO YES YES hsa-miR-137 NO YES YES hsa-miR-141-3p YES YES NO hsa-miR-144-3p NO YES YES hsa-miR-148a-3p NO YES YES hsa-miR-148b-3p NO YES YES hsa-miR-152-3p NO YES YES hsa-miR-182-5p NO YES YES hsa-miR-186-5p YES YES YES hsa-miR-187-3p YES YES NO hsa-miR-18a-5p NO YES YES hsa-miR-18b-5p NO YES YES hsa-miR-196a-5p NO YES YES hsa-miR-196b-5p NO YES YES hsa-miR-19a-3p NO YES YES hsa-miR-19b-3p NO YES YES hsa-miR-200a-3p YES YES NO hsa-miR-200b-3p NO YES YES hsa-miR-200c-3p NO YES YES hsa-miR-219a-5p YES YES NO hsa-miR-221-3p NO YES YES hsa-miR-222-3p NO YES YES hsa-miR-223-3p NO YES YES hsa-miR-26a-5p NO YES YES hsa-miR-26b-5p NO YES YES hsa-miR-29a-3p NO YES YES hsa-miR-29b-3p NO YES YES hsa-miR-29c-3p NO YES YES hsa-miR-300 YES YES YES hsa-miR-301a-3p NO YES YES hsa-miR-301b-3p NO YES YES hsa-miR-30a-5p NO YES YES hsa-miR-30b-5p NO YES YES hsa-miR-30c-5p NO YES YES hsa-miR-30d-5p NO YES YES hsa-miR-30e-5p NO YES YES hsa-miR-329-3p YES YES NO hsa-miR-33a-5p NO YES YES hsa-miR-33b-5p NO YES YES hsa-miR-340-5p NO YES YES hsa-miR-361-5p NO YES YES hsa-miR-362-3p YES YES NO hsa-miR-371a-5p NO YES YES hsa-miR-375 YES YES NO hsa-miR-381-3p YES YES YES hsa-miR-425-5p NO YES YES hsa-miR-429 NO YES YES hsa-miR-433-3p NO YES YES hsa-miR-448 NO YES YES hsa-miR-454-3p NO YES YES hsa-miR-494-3p YES YES NO hsa-miR-543 NO YES YES hsa-miR-98-5p NO YES YES Display: