ctcRbase

Entry Detail

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General Information

Database ID: SKCM02933 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SYVN1 Full Name: synoviolin 1 Category: mRNA Synonyms: DER3|HRD1 Chromosome: chr11 Strand: - Coordinate: Start Site(bp): 65121780 End Site(bp): 65134533 Gene Summary: This gene encodes a protein involved in endoplasmic reticulum (ER)-associated degradation. The encoded protein removes unfolded proteins, accumulated during ER stress, by retrograde transport to the cytosol from the ER. This protein also uses the ubiquitin-proteasome system for additional degradation of unfolded proteins. Sequence analysis identified two transcript variants that encode different isoforms. [provided by RefSeq, May 2011] External Links: Ensembl ID: ENSG00000162298 HGNC ID: HGNC:20738 Entrez Gene: 84447

Expression Profile of SYVN1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-125a-5p YES YES YES hsa-miR-125b-5p YES YES YES hsa-miR-1271-5p YES YES NO hsa-miR-155-5p YES YES YES hsa-miR-194-5p YES YES YES hsa-miR-200b-3p YES YES YES hsa-miR-200c-3p YES YES YES hsa-miR-208a-3p YES YES NO hsa-miR-208b-3p YES YES NO hsa-miR-300 YES YES NO hsa-miR-34a-5p YES NO YES hsa-miR-34c-5p YES NO YES hsa-miR-381-3p YES YES NO hsa-miR-429 YES YES YES hsa-miR-449a YES NO YES hsa-miR-449b-5p YES NO YES hsa-miR-452-5p YES NO YES hsa-miR-485-5p YES YES NO hsa-miR-96-5p YES YES NO Display: