ctcRbase

Entry Detail

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General Information

Database ID: SKCM03195 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: RBMS1 Full Name: RNA binding motif single stranded interacting protein 1 Category: mRNA Synonyms: C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 Chromosome: chr2 Strand: - Coordinate: Start Site(bp): 160272151 End Site(bp): 160493794 Gene Summary: This gene encodes a member of a small family of proteins which bind single stranded DNA/RNA. These proteins are characterized by the presence of two sets of ribonucleoprotein consensus sequence (RNP-CS) that contain conserved motifs, RNP1 and RNP2, originally described in RNA binding proteins, and required for DNA binding. These proteins have been implicated in such diverse functions as DNA replication, gene transcription, cell cycle progression and apoptosis. Several transcript variants, resulting from alternative splicing and encoding different isoforms, have been described. A pseudogene for this locus is found on chromosome 12. [provided by RefSeq, Feb 2009] External Links: Ensembl ID: ENSG00000153250 HGNC ID: HGNC:9907 Entrez Gene: 5937

Expression Profile of RBMS1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p NO YES YES hsa-let-7b-5p NO YES YES hsa-let-7c-5p NO YES YES hsa-let-7d-5p NO YES YES hsa-let-7e-5p NO YES YES hsa-let-7f-5p NO YES YES hsa-let-7g-5p NO YES YES hsa-let-7i-5p NO YES YES hsa-miR-106a-5p NO YES YES hsa-miR-106b-5p NO YES YES hsa-miR-124-3p YES YES YES hsa-miR-129-5p YES YES YES hsa-miR-1297 NO YES YES hsa-miR-133a-3p YES NO YES hsa-miR-133b YES NO YES hsa-miR-141-3p YES YES YES hsa-miR-149-5p NO YES YES hsa-miR-15a-5p NO YES YES hsa-miR-15b-5p NO YES YES hsa-miR-16-5p NO YES YES hsa-miR-17-5p NO YES YES hsa-miR-183-5p NO YES YES hsa-miR-195-5p NO YES YES hsa-miR-19a-3p YES YES YES hsa-miR-19b-3p YES YES YES hsa-miR-200a-3p YES YES YES hsa-miR-205-5p NO YES YES hsa-miR-20a-5p NO YES YES hsa-miR-20b-5p NO YES YES hsa-miR-219a-5p YES NO YES hsa-miR-26a-5p NO YES YES hsa-miR-26b-5p NO YES YES hsa-miR-28-3p YES NO YES hsa-miR-330-3p YES NO YES hsa-miR-340-5p YES YES NO hsa-miR-376a-3p YES YES YES hsa-miR-376b-3p YES YES YES hsa-miR-377-3p NO YES YES hsa-miR-378a-3p NO YES YES hsa-miR-383-5p YES YES YES hsa-miR-384 YES YES NO hsa-miR-422a NO YES YES hsa-miR-424-5p NO YES YES hsa-miR-497-5p NO YES YES hsa-miR-501-3p YES NO YES hsa-miR-502-3p YES NO YES hsa-miR-506-3p YES YES NO hsa-miR-519d-3p NO YES YES hsa-miR-7-5p NO YES YES hsa-miR-93-5p NO YES YES hsa-miR-9-5p NO YES YES hsa-miR-98-5p NO YES YES Display: