ctcRbase

Entry Detail

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General Information

Database ID: SKCM03821 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: RTF1 Full Name: RTF1 homolog, Paf1/RNA polymerase II complex component Category: mRNA Synonyms: GTL7|KIAA0252 Chromosome: chr15 Strand: + Coordinate: Start Site(bp): 41408408 End Site(bp): 41483563 Gene Summary: This locus may represent a gene involved in regulation of transcription elongation and chromatin remodeling, based on studies of similar proteins in other organisms. The encoded protein may bind single-stranded DNA. [provided by RefSeq, Sep 2010] External Links: Ensembl ID: ENSG00000137815 HGNC ID: HGNC:28996 Entrez Gene: 23168

Expression Profile of RTF1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-1297 YES YES YES hsa-miR-132-3p YES YES YES hsa-miR-139-5p YES YES YES hsa-miR-15a-5p YES YES NO hsa-miR-15b-5p YES YES NO hsa-miR-16-5p YES YES NO hsa-miR-181a-5p YES YES NO hsa-miR-181b-5p YES YES NO hsa-miR-181c-5p YES YES NO hsa-miR-181d-5p YES YES NO hsa-miR-186-5p YES YES NO hsa-miR-195-5p YES YES NO hsa-miR-197-3p YES YES NO hsa-miR-200b-3p YES YES YES hsa-miR-200c-3p YES YES YES hsa-miR-212-3p YES YES YES hsa-miR-217 YES YES YES hsa-miR-222-3p YES YES NO hsa-miR-223-3p YES YES NO hsa-miR-23a-3p YES YES YES hsa-miR-23b-3p YES YES YES hsa-miR-26a-5p YES YES YES hsa-miR-26b-5p YES YES YES hsa-miR-299-3p YES YES NO hsa-miR-320a YES YES NO hsa-miR-320b YES YES NO hsa-miR-320c YES YES NO hsa-miR-320d YES YES NO hsa-miR-329-3p YES YES YES hsa-miR-340-5p YES YES NO hsa-miR-34a-5p YES NO YES hsa-miR-34c-5p YES NO YES hsa-miR-362-3p YES YES YES hsa-miR-375 YES NO YES hsa-miR-383-5p YES YES NO hsa-miR-421 YES YES NO hsa-miR-424-5p YES YES NO hsa-miR-429 YES YES YES hsa-miR-433-3p YES YES NO hsa-miR-449a YES NO YES hsa-miR-449b-5p YES NO YES hsa-miR-485-5p YES YES NO hsa-miR-491-5p YES YES YES hsa-miR-494-3p YES YES NO hsa-miR-497-5p YES YES NO hsa-miR-93-5p YES YES NO Display: