ctcRbase

Entry Detail

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General Information

Database ID: SKCM04631 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: TFAP2A Full Name: transcription factor AP-2 alpha Category: mRNA Synonyms: AP-2|AP-2alpha|AP2TF|BOFS|TFAP2 Chromosome: chr6 Strand: - Coordinate: Start Site(bp): 10393186 End Site(bp): 10419659 Gene Summary: The protein encoded by this gene is a transcription factor that binds the consensus sequence 5'-GCCNNNGGC-3'. The encoded protein functions as either a homodimer or as a heterodimer with similar family members. This protein activates the transcription of some genes while inhibiting the transcription of others. Defects in this gene are a cause of branchiooculofacial syndrome (BOFS). Three transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Dec 2009] External Links: Ensembl ID: ENSG00000137203 HGNC ID: HGNC:11742 Entrez Gene: 7020

Expression Profile of TFAP2A Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES YES NO hsa-let-7b-5p YES YES NO hsa-let-7c-5p YES YES NO hsa-let-7d-5p YES YES NO hsa-let-7e-5p YES YES NO hsa-let-7f-5p YES YES NO hsa-let-7g-5p YES YES NO hsa-let-7i-5p YES YES NO hsa-miR-1297 YES YES YES hsa-miR-135a-5p YES YES YES hsa-miR-135b-5p YES YES YES hsa-miR-137 YES YES YES hsa-miR-141-3p YES YES YES hsa-miR-15a-5p YES NO NO hsa-miR-15b-5p YES NO NO hsa-miR-16-5p YES NO NO hsa-miR-185-5p YES NO NO hsa-miR-195-5p YES NO NO hsa-miR-197-3p YES YES NO hsa-miR-200a-3p YES YES YES hsa-miR-200b-3p YES YES YES hsa-miR-200c-3p YES YES YES hsa-miR-204-5p YES YES YES hsa-miR-211-5p YES YES YES hsa-miR-214-3p YES NO NO hsa-miR-221-3p YES NO YES hsa-miR-222-3p YES YES NO hsa-miR-25-3p YES NO YES hsa-miR-26a-5p YES YES YES hsa-miR-26b-5p YES YES YES hsa-miR-296-3p YES YES NO hsa-miR-30a-5p YES YES NO hsa-miR-30b-5p YES YES NO hsa-miR-30c-5p YES YES NO hsa-miR-30d-5p YES YES NO hsa-miR-30e-5p YES YES NO hsa-miR-32-5p YES NO YES hsa-miR-363-3p YES NO YES hsa-miR-367-3p YES NO YES hsa-miR-376c-3p YES YES NO hsa-miR-383-5p YES YES NO hsa-miR-410-3p YES YES NO hsa-miR-424-5p YES NO NO hsa-miR-429 YES YES YES hsa-miR-455-3p YES NO YES hsa-miR-497-5p YES NO NO hsa-miR-599 YES YES NO hsa-miR-876-5p YES YES YES hsa-miR-92a-3p YES NO YES hsa-miR-92b-3p YES NO YES hsa-miR-98-5p YES YES NO Display: