ctcRbase

Entry Detail

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General Information

Database ID: SKCM04870 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: RSF1 Full Name: remodeling and spacing factor 1 Category: mRNA Synonyms: HBXAP|RSF-1|XAP8|p325 Chromosome: chr11 Strand: - Coordinate: Start Site(bp): 77659996 End Site(bp): 77821017 Gene Summary: This gene encodes a nuclear protein that interacts with hepatitis B virus X protein (HBX) and facilitates transcription of hepatitis B virus genes by the HBX transcription activator, suggesting a role for this interaction in the virus life cycle. This protein also interacts with SNF2H protein to form the RSF chromatin-remodeling complex, where the SNF2H subunit functions as the nucleosome-dependent ATPase, and this protein as the histone chaperone. [provided by RefSeq, Sep 2011] External Links: Ensembl ID: ENSG00000048649 HGNC ID: HGNC:18118 Entrez Gene: 51773

Expression Profile of RSF1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES YES NO hsa-miR-138-5p YES YES YES hsa-miR-1-3p YES YES NO hsa-miR-142-3p YES YES YES hsa-miR-142-5p YES NO YES hsa-miR-154-5p YES YES NO hsa-miR-185-5p YES YES NO hsa-miR-186-5p YES YES NO hsa-miR-193a-3p YES YES YES hsa-miR-193b-3p YES YES YES hsa-miR-194-5p YES YES NO hsa-miR-206 YES YES NO hsa-miR-224-5p YES YES NO hsa-miR-27a-3p YES YES YES hsa-miR-27b-3p YES YES YES hsa-miR-296-5p YES NO YES hsa-miR-300 YES YES YES hsa-miR-302a-3p YES YES YES hsa-miR-302b-3p YES YES YES hsa-miR-302c-3p YES YES YES hsa-miR-302d-3p YES YES YES hsa-miR-302e YES YES YES hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES YES hsa-miR-320a YES YES NO hsa-miR-320b YES YES NO hsa-miR-320c YES YES NO hsa-miR-320d YES YES NO hsa-miR-328-3p YES YES NO hsa-miR-340-5p YES YES YES hsa-miR-371a-5p YES YES NO hsa-miR-372-3p YES YES YES hsa-miR-373-3p YES YES YES hsa-miR-374a-5p YES YES YES hsa-miR-374b-5p YES YES YES hsa-miR-381-3p YES YES YES hsa-miR-490-3p YES YES NO hsa-miR-495-3p YES YES NO hsa-miR-520a-3p YES YES YES hsa-miR-520b YES YES YES hsa-miR-520c-3p YES YES YES hsa-miR-520d-3p YES YES YES hsa-miR-520e YES YES YES hsa-miR-520f-3p YES NO YES hsa-miR-613 YES YES NO hsa-miR-653-5p YES YES NO hsa-miR-873-5p YES YES YES hsa-miR-876-5p YES YES NO Display: