ctcRbase

Entry Detail

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General Information

Database ID: SKCM05749 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SRGAP1 Full Name: SLIT-ROBO Rho GTPase activating protein 1 Category: mRNA Synonyms: ARHGAP13|NMTC2 Chromosome: chr12 Strand: + Coordinate: Start Site(bp): 63844293 End Site(bp): 64162221 Gene Summary: The protein encoded by this gene is a GTPase activator, working with the GTPase CDC42 to negatively regulate neuronal migration. The encoded protein interacts with the transmembrane receptor ROBO1 to inactivate CDC42. [provided by RefSeq, Sep 2016] External Links: Ensembl ID: ENSG00000196935 HGNC ID: HGNC:17382 Entrez Gene: 57522

Expression Profile of SRGAP1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p NO YES YES hsa-let-7b-5p NO YES YES hsa-let-7c-5p NO YES YES hsa-let-7d-5p NO YES YES hsa-let-7e-5p NO YES YES hsa-let-7f-5p NO YES YES hsa-let-7g-5p NO YES YES hsa-let-7i-5p NO YES YES hsa-miR-101-3p NO YES YES hsa-miR-103a-3p YES YES YES hsa-miR-106a-5p NO YES YES hsa-miR-106b-5p NO YES YES hsa-miR-107 YES YES YES hsa-miR-124-3p NO YES YES hsa-miR-1297 YES YES YES hsa-miR-132-3p NO YES YES hsa-miR-143-3p YES YES NO hsa-miR-145-5p YES YES YES hsa-miR-17-5p NO YES YES hsa-miR-181a-5p YES NO YES hsa-miR-181b-5p YES NO YES hsa-miR-181c-5p YES NO YES hsa-miR-181d-5p YES NO YES hsa-miR-194-5p NO YES YES hsa-miR-200b-3p NO YES YES hsa-miR-200c-3p NO YES YES hsa-miR-205-5p YES NO YES hsa-miR-20a-5p NO YES YES hsa-miR-20b-5p NO YES YES hsa-miR-212-3p NO YES YES hsa-miR-224-5p YES YES NO hsa-miR-26a-5p YES YES YES hsa-miR-26b-5p YES YES YES hsa-miR-323a-3p YES NO YES hsa-miR-33a-5p NO YES YES hsa-miR-33b-5p NO YES YES hsa-miR-340-5p NO YES YES hsa-miR-365a-3p YES YES YES hsa-miR-374a-5p NO YES YES hsa-miR-374b-5p NO YES YES hsa-miR-376c-3p YES YES YES hsa-miR-429 NO YES YES hsa-miR-494-3p YES YES NO hsa-miR-519d-3p NO YES YES hsa-miR-876-5p YES NO YES hsa-miR-93-5p NO YES YES hsa-miR-98-5p NO YES YES Display: