ctcRbase

Entry Detail

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General Information

Database ID: SKCM05922 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: RPRD1A Full Name: regulation of nuclear pre-mRNA domain containing 1A Category: mRNA Synonyms: HsT3101|P15RS Chromosome: chr18 Strand: - Coordinate: Start Site(bp): 35984387 End Site(bp): 36067576 Gene Summary: This gene encodes a cell-cycle and transcription regulatory protein. The encoded protein interacts with the cell cycle inhibitor cyclin-dependent kinase 4 inhibitor B and may function as a negative regulator of G(1)/S phase progression. This protein also forms homo- and hetrodimers with the protein, regulation of nuclear pre-mRNA domain-containing protein 1B, to form a scaffold that interacts with the C-terminal domain of RNA polymerase II subunit B1 and regulates several aspects of transcription. Alternate splicing results in multiple transcript variants. A pseudogene of this gene is found on chromosome 16. [provided by RefSeq, Dec 2014] External Links: Ensembl ID: ENSG00000141425 HGNC ID: HGNC:25560 Entrez Gene: 55197

Expression Profile of RPRD1A Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-10a-5p YES YES YES hsa-miR-10b-5p YES YES YES hsa-miR-129-5p YES YES NO hsa-miR-130a-3p YES YES YES hsa-miR-130b-3p YES YES YES hsa-miR-136-5p YES NO YES hsa-miR-142-3p YES YES YES hsa-miR-181a-5p YES YES NO hsa-miR-181b-5p YES YES NO hsa-miR-181c-5p YES YES NO hsa-miR-181d-5p YES YES NO hsa-miR-182-5p YES YES NO hsa-miR-185-5p YES YES NO hsa-miR-186-5p YES YES NO hsa-miR-187-3p YES YES NO hsa-miR-194-5p YES YES NO hsa-miR-197-3p YES YES NO hsa-miR-19a-3p YES YES NO hsa-miR-19b-3p YES YES NO hsa-miR-200b-3p YES YES YES hsa-miR-200c-3p YES YES YES hsa-miR-214-3p YES YES NO hsa-miR-21-5p YES YES YES hsa-miR-224-5p YES NO YES hsa-miR-23a-3p YES YES NO hsa-miR-23b-3p YES YES NO hsa-miR-28-5p YES YES YES hsa-miR-300 YES NO YES hsa-miR-301a-3p YES YES YES hsa-miR-301b-3p YES YES YES hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES YES hsa-miR-329-3p YES YES NO hsa-miR-340-5p YES YES YES hsa-miR-342-3p YES NO YES hsa-miR-362-3p YES YES NO hsa-miR-375 YES YES NO hsa-miR-381-3p YES YES YES hsa-miR-421 YES YES NO hsa-miR-429 YES YES YES hsa-miR-454-3p YES YES YES hsa-miR-488-3p YES YES NO hsa-miR-490-3p YES NO YES hsa-miR-494-3p YES YES YES hsa-miR-495-3p YES YES YES hsa-miR-590-5p YES YES YES hsa-miR-655-3p YES NO YES hsa-miR-708-5p YES YES YES hsa-miR-758-3p YES YES NO Display: