Entry Detail



General Information

Database ID:SKCM06086
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:ABCB9
Full Name:ATP binding cassette subfamily B member 9
Category:mRNA
Synonyms:EST122234|TAPL
Chromosome:chr12
Strand:-
Coordinate:
Start Site(bp):122920951End Site(bp):122981649
Gene Summary:The membrane-associated protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the MDR/TAP subfamily. Members of the MDR/TAP subfamily are involved in multidrug resistance as well as antigen presentation. This family member functions in the translocation of peptides from the cytosol into the lysosomal lumen. Alternative splicing of this gene results in distinct isoforms which are likely to have different substrate specificities. [provided by RefSeq, Jul 2011]
External Links:
Ensembl ID:ENSG00000150967
HGNC ID:HGNC:50
Entrez Gene:23457



Expression Profile of ABCB9 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-let-7a-5p
YES
YES
YES
hsa-let-7b-5p
YES
YES
YES
hsa-let-7c-5p
YES
YES
YES
hsa-let-7d-5p
YES
YES
YES
hsa-let-7e-5p
YES
YES
YES
hsa-let-7f-5p
YES
YES
YES
hsa-let-7g-5p
YES
YES
YES
hsa-let-7i-5p
YES
YES
YES
hsa-miR-128-3p
YES
YES
YES
hsa-miR-196a-5p
YES
YES
YES
hsa-miR-196b-5p
YES
YES
YES
hsa-miR-24-3p
YES
YES
NO
hsa-miR-27a-3p
YES
YES
YES
hsa-miR-27b-3p
YES
YES
YES
hsa-miR-31-5p
YES
YES
NO
hsa-miR-98-5p
YES
YES
YES
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