ctcRbase

Entry Detail

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General Information

Database ID: SKCM06087 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: CPSF7 Full Name: cleavage and polyadenylation specific factor 7 Category: mRNA Synonyms: CFIm59 Chromosome: chr11 Strand: - Coordinate: Start Site(bp): 61402641 End Site(bp): 61430031 Gene Summary: Cleavage factor Im (CFIm) is one of six factors necessary for correct cleavage and polyadenylation of pre-mRNAs. CFIm is composed of three different subunits of 25, 59, and 68 kDa, and it functions as a heterotetramer, with a dimer of the 25 kDa subunit binding to two of the 59 or 68 kDa subunits. The protein encoded by this gene represents the 59 kDa subunit, which can interact with the splicing factor U2 snRNP Auxiliary Factor (U2AF) 65 to link the splicing and polyadenylation complexes. [provided by RefSeq, Oct 2016] External Links: Ensembl ID: ENSG00000149532 HGNC ID: HGNC:30098 Entrez Gene: 79869

Expression Profile of CPSF7 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-1271-5p YES YES YES hsa-miR-132-3p YES YES NO hsa-miR-134-5p YES YES NO hsa-miR-1-3p YES NO YES hsa-miR-149-5p YES YES NO hsa-miR-150-5p YES YES NO hsa-miR-15a-5p YES YES NO hsa-miR-15b-5p YES YES NO hsa-miR-16-5p YES YES NO hsa-miR-195-5p YES YES NO hsa-miR-206 YES NO YES hsa-miR-212-3p YES YES NO hsa-miR-28-5p YES YES NO hsa-miR-29a-3p YES YES YES hsa-miR-29b-3p YES YES YES hsa-miR-29c-3p YES YES YES hsa-miR-330-3p YES NO YES hsa-miR-342-3p NO YES YES hsa-miR-346 YES YES YES hsa-miR-361-5p YES YES YES hsa-miR-421 YES YES NO hsa-miR-424-5p YES YES NO hsa-miR-455-5p YES YES YES hsa-miR-491-5p YES YES NO hsa-miR-495-3p YES NO NO hsa-miR-497-5p YES YES NO hsa-miR-505-3p YES YES NO hsa-miR-613 YES NO YES hsa-miR-708-5p YES YES NO hsa-miR-758-3p YES YES NO hsa-miR-873-5p YES YES NO hsa-miR-874-3p YES YES NO hsa-miR-96-5p YES YES YES Display: