ctcRbase

Entry Detail

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General Information

Database ID: SKCM06560 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: PRDM5 Full Name: PR/SET domain 5 Category: mRNA Synonyms: BCS2|PFM2 Chromosome: chr4 Strand: - Coordinate: Start Site(bp): 120684919 End Site(bp): 120922870 Gene Summary: The protein encoded by this gene is a transcription factor of the PR-domain protein family. It contains a PR-domain and multiple zinc finger motifs. Transcription factors of the PR-domain family are known to be involved in cell differentiation and tumorigenesis. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000138738 HGNC ID: HGNC:9349 Entrez Gene: 11107

Expression Profile of PRDM5 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p NO YES YES hsa-let-7b-5p NO YES YES hsa-let-7c-5p NO YES YES hsa-let-7d-5p NO YES YES hsa-let-7e-5p NO YES YES hsa-let-7f-5p NO YES YES hsa-let-7g-5p NO YES YES hsa-let-7i-5p NO YES YES hsa-miR-129-2-3p YES NO YES hsa-miR-183-5p NO YES YES hsa-miR-196a-5p NO YES YES hsa-miR-196b-5p NO YES YES hsa-miR-28-5p YES YES NO hsa-miR-30a-5p NO YES YES hsa-miR-30b-5p NO YES YES hsa-miR-30c-5p NO YES YES hsa-miR-30d-5p NO YES YES hsa-miR-30e-5p NO YES YES hsa-miR-708-5p YES YES NO hsa-miR-98-5p NO YES YES Display: