Entry Detail



General Information

Database ID:SKCM06876
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:ATF6
Full Name:activating transcription factor 6
Category:mRNA
Synonyms:ACHM7|ATF6A
Chromosome:chr1
Strand:+
Coordinate:
Start Site(bp):161766294End Site(bp):161964070
Gene Summary:This gene encodes a transcription factor that activates target genes for the unfolded protein response (UPR) during endoplasmic reticulum (ER) stress. Although it is a transcription factor, this protein is unusual in that it is synthesized as a transmembrane protein that is embedded in the ER. It functions as an ER stress sensor/transducer, and following ER stress-induced proteolysis, it functions as a nuclear transcription factor via a cis-acting ER stress response element (ERSE) that is present in the promoters of genes encoding ER chaperones. This protein has been identified as a survival factor for quiescent but not proliferative squamous carcinoma cells. There have been conflicting reports about the association of polymorphisms in this gene with diabetes in different populations, but another polymorphism has been associated with increased plasma cholesterol levels. This gene is also thought to be a potential therapeutic target for cystic fibrosis. [provided by RefSeq, Aug 2011]
External Links:
Ensembl ID:ENSG00000118217
HGNC ID:HGNC:791
Entrez Gene:22926



Expression Profile of ATF6 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-103a-3p
YES
YES
NO
hsa-miR-107
YES
YES
NO
hsa-miR-141-3p
YES
YES
YES
hsa-miR-15a-5p
YES
YES
NO
hsa-miR-15b-5p
YES
YES
NO
hsa-miR-16-5p
YES
YES
NO
hsa-miR-183-5p
YES
YES
NO
hsa-miR-185-5p
YES
YES
NO
hsa-miR-186-5p
YES
YES
NO
hsa-miR-195-5p
YES
YES
NO
hsa-miR-199a-5p
YES
YES
NO
hsa-miR-199b-5p
YES
YES
NO
hsa-miR-200a-3p
YES
YES
YES
hsa-miR-221-3p
YES
YES
NO
hsa-miR-222-3p
YES
YES
NO
hsa-miR-424-5p
YES
YES
NO
hsa-miR-494-3p
YES
YES
NO
hsa-miR-497-5p
YES
YES
NO
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