ctcRbase

Entry Detail

---



General Information

Database ID: SKCM07181 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: FKRP Full Name: fukutin related protein Category: mRNA Synonyms: LGMD2I|LGMDR9|MDC1C|MDDGA5|MDDGB5|MDDGC5 Chromosome: chr19 Strand: + Coordinate: Start Site(bp): 46746046 End Site(bp): 46776988 Gene Summary: This gene encodes a protein which is targeted to the medial Golgi apparatus and is necessary for posttranslational modification of dystroglycan. Mutations in this gene have been associated with congenital muscular dystrophy, cognitive disability, and cerebellar cysts. Several alternatively spliced transcript variants of this gene have been described, but the full-length nature of some of these variants has not been determined. [provided by RefSeq, Oct 2008] External Links: Ensembl ID: ENSG00000181027 HGNC ID: HGNC:17997 Entrez Gene: 79147

Expression Profile of FKRP Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES NO YES hsa-let-7b-5p YES NO YES hsa-let-7c-5p YES NO YES hsa-let-7d-5p YES NO YES hsa-let-7e-5p YES NO YES hsa-let-7f-5p YES NO YES hsa-let-7g-5p YES NO YES hsa-let-7i-5p YES NO YES hsa-miR-141-3p YES YES NO hsa-miR-15a-5p YES NO YES hsa-miR-15b-5p YES NO YES hsa-miR-16-5p YES NO YES hsa-miR-195-5p YES NO YES hsa-miR-200a-3p YES YES NO hsa-miR-22-3p YES YES NO hsa-miR-340-5p YES YES NO hsa-miR-424-5p YES NO YES hsa-miR-491-5p YES YES NO hsa-miR-497-5p YES NO YES hsa-miR-503-5p YES NO YES hsa-miR-98-5p YES NO YES Display: