Entry Detail



General Information

Database ID:SKCM07413
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:VDR
Full Name:vitamin D receptor
Category:mRNA
Synonyms:NR1I1|PPP1R163
Chromosome:chr12
Strand:-
Coordinate:
Start Site(bp):47841537End Site(bp):47943048
Gene Summary:This gene encodes vitamin D3 receptor, which is a member of the nuclear hormone receptor superfamily of ligand-inducible transcription factors. This receptor also functions as a receptor for the secondary bile acid, lithocholic acid. Downstream targets of vitamin D3 receptor are principally involved in mineral metabolism, though this receptor regulates a variety of other metabolic pathways, such as those involved in immune response and cancer. Mutations in this gene are associated with type II vitamin D-resistant rickets. A single nucleotide polymorphism in the initiation codon results in an alternate translation start site three codons downstream. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. A recent study provided evidence for translational readthrough in this gene, and expression of an additional C-terminally extended isoform via the use of an alternative in-frame translation termination codon. [provided by RefSeq, Jun 2018]
External Links:
Ensembl ID:ENSG00000111424
HGNC ID:HGNC:12679
Entrez Gene:7421



Expression Profile of VDR Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-10a-5p
YES
YES
NO
hsa-miR-10b-5p
YES
YES
NO
hsa-miR-136-5p
YES
YES
NO
hsa-miR-185-5p
YES
NO
NO
hsa-miR-214-3p
YES
YES
NO
hsa-miR-302a-3p
YES
YES
YES
hsa-miR-302b-3p
YES
YES
YES
hsa-miR-302c-3p
YES
YES
YES
hsa-miR-302d-3p
YES
YES
YES
hsa-miR-302e
YES
YES
YES
hsa-miR-326
YES
YES
NO
hsa-miR-330-5p
YES
YES
NO
hsa-miR-372-3p
YES
YES
YES
hsa-miR-373-3p
YES
YES
YES
hsa-miR-374a-5p
YES
YES
NO
hsa-miR-374b-5p
YES
YES
NO
hsa-miR-520a-3p
YES
YES
YES
hsa-miR-520b
YES
YES
YES
hsa-miR-520c-3p
YES
YES
YES
hsa-miR-520d-3p
YES
YES
YES
hsa-miR-520e
YES
YES
YES
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