ctcRbase

Entry Detail

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General Information

Database ID: SKCM07734 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: COLEC12 Full Name: collectin subfamily member 12 Category: mRNA Synonyms: CLP1|NSR2|SCARA4|SRCL Chromosome: chr18 Strand: - Coordinate: Start Site(bp): 316740 End Site(bp): 500722 Gene Summary: This gene encodes a member of the C-lectin family, proteins that possess collagen-like sequences and carbohydrate recognition domains. This protein is a scavenger receptor that displays several functions associated with host defense. It can bind to carbohydrate antigens on microorganisms, facilitating their recognition and removal. It also mediates the recognition, internalization, and degradation of oxidatively modified low density lipoprotein by vascular endothelial cells. [provided by RefSeq, May 2018] External Links: Ensembl ID: ENSG00000158270 HGNC ID: HGNC:16016 Entrez Gene: 81035

Expression Profile of COLEC12 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-136-5p YES YES NO hsa-miR-144-3p YES YES NO hsa-miR-153-3p YES YES NO hsa-miR-183-5p YES YES NO hsa-miR-300 YES YES NO hsa-miR-320a YES YES NO hsa-miR-320b YES YES NO hsa-miR-320c YES YES NO hsa-miR-320d YES YES NO hsa-miR-346 YES YES NO hsa-miR-381-3p YES YES NO hsa-miR-384 YES YES NO hsa-miR-448 YES YES NO hsa-miR-7-5p YES YES NO hsa-miR-876-5p YES YES NO hsa-miR-9-5p YES YES YES Display: