ctcRbase

Entry Detail

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General Information

Database ID: SKCM07883 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: COL5A2 Full Name: collagen type V alpha 2 chain Category: mRNA Synonyms: EDSC|EDSCL2 Chromosome: chr2 Strand: - Coordinate: Start Site(bp): 189031896 End Site(bp): 189179879 Gene Summary: This gene encodes an alpha chain for one of the low abundance fibrillar collagens. Fibrillar collagen molecules are trimers that can be composed of one or more types of alpha chains. Type V collagen is found in tissues containing type I collagen and appears to regulate the assembly of heterotypic fibers composed of both type I and type V collagen. This gene product is closely related to type XI collagen and it is possible that the collagen chains of types V and XI constitute a single collagen type with tissue-specific chain combinations. Mutations in this gene are associated with Ehlers-Danlos syndrome, types I and II. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000204262 HGNC ID: HGNC:2210 Entrez Gene: 1290

Expression Profile of COL5A2 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES YES YES hsa-let-7b-5p YES YES YES hsa-let-7c-5p YES YES YES hsa-let-7d-5p YES YES YES hsa-let-7e-5p YES YES YES hsa-let-7f-5p YES YES YES hsa-let-7g-5p YES YES YES hsa-let-7i-5p YES YES YES hsa-miR-106a-5p YES YES NO hsa-miR-106b-5p YES YES NO hsa-miR-132-3p YES YES NO hsa-miR-143-3p YES YES YES hsa-miR-144-3p YES YES YES hsa-miR-17-5p YES YES NO hsa-miR-191-5p YES YES NO hsa-miR-20a-5p YES YES NO hsa-miR-20b-5p YES YES NO hsa-miR-212-3p YES YES NO hsa-miR-23a-3p YES YES NO hsa-miR-23b-3p YES YES NO hsa-miR-29a-3p YES YES YES hsa-miR-29b-3p YES YES YES hsa-miR-29c-3p YES YES YES hsa-miR-33a-5p YES YES NO hsa-miR-33b-5p YES YES NO hsa-miR-340-5p YES YES NO hsa-miR-369-3p YES NO NO hsa-miR-384 YES YES NO hsa-miR-519d-3p YES YES NO hsa-miR-616-3p YES NO NO hsa-miR-7-5p YES YES NO hsa-miR-93-5p YES YES NO hsa-miR-98-5p YES YES YES Display: