ctcRbase

Entry Detail

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General Information

Database ID: SKCM07901 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: ATAD2B Full Name: ATPase family, AAA domain containing 2B Category: mRNA Synonyms: - Chromosome: chr2 Strand: - Coordinate: Start Site(bp): 23748664 End Site(bp): 23927114 Gene Summary: The protein encoded by this gene belongs to the AAA ATPase family. This family member includes an N-terminal bromodomain. It has been found to be localized to the nucleus, partly to replication sites, consistent with a chromatin-related function. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Jul 2014] External Links: Ensembl ID: ENSG00000119778 HGNC ID: HGNC:29230 Entrez Gene: 54454

Expression Profile of ATAD2B Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES YES YES hsa-miR-103a-3p YES NO YES hsa-miR-107 YES NO YES hsa-miR-124-3p YES YES YES hsa-miR-129-5p YES YES NO hsa-miR-1297 YES YES YES hsa-miR-141-3p YES YES NO hsa-miR-144-3p YES YES YES hsa-miR-145-5p YES NO YES hsa-miR-147a YES NO NO hsa-miR-150-5p YES YES NO hsa-miR-155-5p YES YES NO hsa-miR-182-5p YES YES NO hsa-miR-186-5p YES YES NO hsa-miR-194-5p YES NO YES hsa-miR-200a-3p YES YES NO hsa-miR-214-3p YES YES NO hsa-miR-21-5p YES YES NO hsa-miR-221-3p YES YES YES hsa-miR-222-3p YES YES YES hsa-miR-224-5p YES YES NO hsa-miR-24-3p YES YES YES hsa-miR-26a-5p YES YES YES hsa-miR-26b-5p YES YES YES hsa-miR-27a-3p YES YES YES hsa-miR-27b-3p YES YES YES hsa-miR-28-5p YES YES NO hsa-miR-29a-3p YES YES YES hsa-miR-29b-3p YES YES YES hsa-miR-29c-3p YES YES YES hsa-miR-30a-5p YES YES YES hsa-miR-30b-5p YES YES YES hsa-miR-30c-5p YES YES YES hsa-miR-30d-5p YES YES YES hsa-miR-30e-5p YES YES YES hsa-miR-374a-5p YES YES NO hsa-miR-374b-5p YES YES NO hsa-miR-376c-3p YES YES NO hsa-miR-411-5p YES YES NO hsa-miR-421 YES YES YES hsa-miR-506-3p YES YES NO hsa-miR-590-5p YES YES NO hsa-miR-708-5p YES YES NO hsa-miR-758-3p YES YES NO hsa-miR-760 YES NO YES Display: