ctcRbase

Entry Detail

---



General Information

Database ID: SKCM07912 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: TARBP1 Full Name: TAR (HIV-1) RNA binding protein 1 Category: mRNA Synonyms: TRM3|TRMT3|TRP-185|TRP185 Chromosome: chr1 Strand: - Coordinate: Start Site(bp): 234391313 End Site(bp): 234479103 Gene Summary: HIV-1, the causative agent of acquired immunodeficiency syndrome (AIDS), contains an RNA genome that produces a chromosomally integrated DNA during the replicative cycle. Activation of HIV-1 gene expression by the transactivator Tat is dependent on an RNA regulatory element (TAR) located downstream of the transcription initiation site. This element forms a stable stem-loop structure and can be bound by either the protein encoded by this gene or by RNA polymerase II. This protein may act to disengage RNA polymerase II from TAR during transcriptional elongation. Alternatively spliced transcripts of this gene may exist, but their full-length natures have not been determined. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000059588 HGNC ID: HGNC:11568 Entrez Gene: 6894

Expression Profile of TARBP1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-103a-3p YES NO NO hsa-miR-107 YES NO NO hsa-miR-124-3p YES YES YES hsa-miR-1271-5p YES YES YES hsa-miR-15a-5p YES YES NO hsa-miR-15b-5p YES YES NO hsa-miR-16-5p YES YES NO hsa-miR-182-5p YES YES YES hsa-miR-186-5p YES YES NO hsa-miR-195-5p YES YES NO hsa-miR-214-3p YES NO NO hsa-miR-300 YES YES NO hsa-miR-381-3p YES YES NO hsa-miR-424-5p YES YES NO hsa-miR-497-5p YES YES NO hsa-miR-503-5p YES NO NO hsa-miR-506-3p YES YES NO hsa-miR-96-5p YES YES YES Display: