ctcRbase

Entry Detail

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General Information

Database ID: SKCM07969 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SNX11 Full Name: sorting nexin 11 Category: mRNA Synonyms: - Chromosome: chr17 Strand: + Coordinate: Start Site(bp): 48103357 End Site(bp): 48123074 Gene Summary: This gene encodes a member of the sorting nexin family. Members of this family contain a phox (PX) domain, which is a phosphoinositide binding domain, and are involved in intracellular trafficking. This protein does not contain a coiled coil region, like some family members. This gene encodes a protein of unknown function. This gene results in two transcript variants differing in the 5' UTR, but encoding the same protein. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000002919 HGNC ID: HGNC:14975 Entrez Gene: 29916

Expression Profile of SNX11 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES YES NO hsa-let-7b-5p YES YES NO hsa-let-7c-5p YES YES NO hsa-let-7d-5p YES YES NO hsa-let-7e-5p YES YES NO hsa-let-7f-5p YES YES NO hsa-let-7g-5p YES YES NO hsa-let-7i-5p YES YES NO hsa-miR-106a-5p YES YES NO hsa-miR-106b-5p YES YES NO hsa-miR-143-3p YES YES NO hsa-miR-144-3p YES YES NO hsa-miR-149-5p YES YES NO hsa-miR-17-5p YES YES NO hsa-miR-194-5p YES YES NO hsa-miR-20a-5p YES YES NO hsa-miR-20b-5p YES YES NO hsa-miR-214-3p YES YES NO hsa-miR-29a-3p YES YES NO hsa-miR-29b-3p YES YES NO hsa-miR-29c-3p YES YES NO hsa-miR-33a-5p YES YES NO hsa-miR-33b-5p YES YES NO hsa-miR-377-3p YES YES NO hsa-miR-519d-3p YES YES NO hsa-miR-874-3p YES YES NO hsa-miR-93-5p YES YES NO hsa-miR-98-5p YES YES NO Display: