ctcRbase

Entry Detail

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General Information

Database ID: SKCM08057 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: VANGL1 Full Name: VANGL planar cell polarity protein 1 Category: mRNA Synonyms: KITENIN|LPP2|STB2|STBM2 Chromosome: chr1 Strand: + Coordinate: Start Site(bp): 115641953 End Site(bp): 115698224 Gene Summary: This gene encodes a member of the tretraspanin family. The encoded protein may be involved in mediating intestinal trefoil factor induced wound healing in the intestinal mucosa. Mutations in this gene are associated with neural tube defects. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Feb 2010] External Links: Ensembl ID: ENSG00000173218 HGNC ID: HGNC:15512 Entrez Gene: 81839

Expression Profile of VANGL1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-106a-5p YES NO YES hsa-miR-106b-5p YES NO YES hsa-miR-128-3p YES NO YES hsa-miR-130a-3p YES NO YES hsa-miR-130b-3p YES NO YES hsa-miR-142-5p YES NO YES hsa-miR-144-3p YES YES YES hsa-miR-145-5p YES NO YES hsa-miR-17-5p YES NO YES hsa-miR-183-5p YES NO YES hsa-miR-185-5p YES NO NO hsa-miR-199a-3p YES NO YES hsa-miR-199b-3p YES NO YES hsa-miR-19a-3p YES NO YES hsa-miR-19b-3p YES NO YES hsa-miR-204-5p YES YES NO hsa-miR-20a-5p YES NO YES hsa-miR-20b-5p YES NO YES hsa-miR-211-5p YES YES NO hsa-miR-214-3p YES NO NO hsa-miR-27a-3p YES YES YES hsa-miR-27b-3p YES YES YES hsa-miR-299-5p YES NO YES hsa-miR-29a-3p YES NO YES hsa-miR-29b-3p YES NO YES hsa-miR-29c-3p YES NO YES hsa-miR-301a-3p YES NO YES hsa-miR-301b-3p YES NO YES hsa-miR-329-3p YES NO NO hsa-miR-362-3p YES NO NO hsa-miR-370-3p YES NO YES hsa-miR-378a-3p YES NO YES hsa-miR-422a YES NO YES hsa-miR-454-3p YES NO YES hsa-miR-506-3p YES NO YES hsa-miR-519d-3p YES NO YES hsa-miR-582-5p YES NO YES hsa-miR-93-5p YES NO YES hsa-miR-9-5p YES NO YES Display: