ctcRbase

Entry Detail

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General Information

Database ID: SKCM08198 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: NKRF Full Name: NFKB repressing factor Category: mRNA Synonyms: ITBA4|NRF Chromosome: chrX Strand: - Coordinate: Start Site(bp): 119588337 End Site(bp): 119605895 Gene Summary: This gene encodes a transcriptional repressor that interacts with specific negative regulatory elements to mediate transcriptional repression of certain nuclear factor kappa B responsive genes. The protein localizes predominantly to the nucleolus with a small fraction found in the nucleoplasm and cytoplasm. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Mar 2010] External Links: Ensembl ID: ENSG00000186416 HGNC ID: HGNC:19374 Entrez Gene: 55922

Expression Profile of NKRF Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p YES YES NO hsa-miR-124-3p YES YES YES hsa-miR-1297 YES YES YES hsa-miR-140-3p YES NO YES hsa-miR-141-3p YES YES NO hsa-miR-144-3p YES NO YES hsa-miR-181a-5p YES YES YES hsa-miR-181b-5p YES YES NO hsa-miR-181c-5p YES YES YES hsa-miR-181d-5p YES YES YES hsa-miR-185-5p YES YES NO hsa-miR-190a-5p YES YES NO hsa-miR-190b YES YES NO hsa-miR-200a-3p YES YES NO hsa-miR-208a-3p YES YES NO hsa-miR-208b-3p YES YES NO hsa-miR-26a-5p YES YES YES hsa-miR-26b-5p YES YES YES hsa-miR-29a-3p YES YES YES hsa-miR-29b-3p YES YES YES hsa-miR-29c-3p YES YES YES hsa-miR-300 YES YES YES hsa-miR-330-3p YES NO YES hsa-miR-340-5p YES YES YES hsa-miR-377-3p YES YES YES hsa-miR-379-5p YES YES NO hsa-miR-381-3p YES YES YES hsa-miR-382-5p YES YES NO hsa-miR-495-3p YES YES YES hsa-miR-499a-5p YES YES NO hsa-miR-506-3p YES YES NO hsa-miR-520f-3p YES NO YES hsa-miR-543 YES YES YES hsa-miR-655-3p YES NO YES hsa-miR-802 YES NO YES hsa-miR-873-5p YES YES YES hsa-miR-876-5p YES YES NO Display: