ctcRbase

Entry Detail

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General Information

Database ID: SKCM08510 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: THBS1 Full Name: thrombospondin 1 Category: mRNA Synonyms: THBS|THBS-1|TSP|TSP-1|TSP1 Chromosome: chr15 Strand: + Coordinate: Start Site(bp): 39581079 End Site(bp): 39599466 Gene Summary: The protein encoded by this gene is a subunit of a disulfide-linked homotrimeric protein. This protein is an adhesive glycoprotein that mediates cell-to-cell and cell-to-matrix interactions. This protein can bind to fibrinogen, fibronectin, laminin, type V collagen and integrins alpha-V/beta-1. This protein has been shown to play roles in platelet aggregation, angiogenesis, and tumorigenesis. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000137801 HGNC ID: HGNC:11785 Entrez Gene: 7057

Expression Profile of THBS1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p YES YES YES hsa-let-7b-5p YES YES YES hsa-let-7c-5p YES YES YES hsa-let-7d-5p YES YES YES hsa-let-7e-5p YES YES YES hsa-let-7f-5p YES YES YES hsa-let-7g-5p YES YES YES hsa-let-7i-5p YES YES YES hsa-miR-101-3p YES NO YES hsa-miR-132-3p YES NO YES hsa-miR-135a-5p YES YES NO hsa-miR-135b-5p YES YES NO hsa-miR-136-5p YES YES NO hsa-miR-138-5p YES YES NO hsa-miR-139-5p YES NO YES hsa-miR-1-3p YES YES YES hsa-miR-141-3p YES YES NO hsa-miR-143-3p YES NO YES hsa-miR-144-3p YES YES NO hsa-miR-181a-5p YES YES NO hsa-miR-181b-5p YES YES NO hsa-miR-181d-5p YES YES NO hsa-miR-182-5p YES YES YES hsa-miR-186-5p YES YES NO hsa-miR-18a-5p YES YES YES hsa-miR-18b-5p YES YES YES hsa-miR-194-5p YES YES YES hsa-miR-19a-3p YES YES YES hsa-miR-19b-3p YES YES YES hsa-miR-200a-3p YES YES NO hsa-miR-205-5p YES NO YES hsa-miR-206 YES YES YES hsa-miR-212-3p YES NO YES hsa-miR-21-5p YES YES NO hsa-miR-217 YES YES NO hsa-miR-221-3p YES NO YES hsa-miR-222-3p YES YES YES hsa-miR-300 YES NO YES hsa-miR-331-3p YES NO YES hsa-miR-338-3p YES YES YES hsa-miR-340-5p YES YES NO hsa-miR-371a-5p YES YES NO hsa-miR-375 YES YES NO hsa-miR-377-3p YES YES YES hsa-miR-381-3p YES YES YES hsa-miR-383-5p YES YES NO hsa-miR-384 YES YES YES hsa-miR-410-3p YES YES NO hsa-miR-485-5p YES YES NO hsa-miR-487b-3p YES YES NO hsa-miR-491-5p YES YES NO hsa-miR-494-3p YES YES NO hsa-miR-495-3p YES YES NO hsa-miR-505-3p YES YES NO hsa-miR-543 YES NO YES hsa-miR-582-5p YES NO YES hsa-miR-590-5p YES YES NO hsa-miR-613 YES YES YES hsa-miR-873-5p YES YES NO hsa-miR-98-5p YES YES YES Display: