Entry Detail



General Information

Database ID:SKCM08639
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:SNX4
Full Name:sorting nexin 4
Category:mRNA
Synonyms:ATG24B
Chromosome:chr3
Strand:-
Coordinate:
Start Site(bp):125446644End Site(bp):125520197
Gene Summary:This gene encodes a member of the sorting nexin family. Members of this family contain a phox (PX) domain, which is a phosphoinositide binding domain, and are involved in intracellular trafficking. This protein associated with the long isoform of the leptin receptor and with receptor tyrosine kinases for platelet-derived growth factor, insulin, and epidermal growth factor in cell cultures, but its function is unknown. This protein may form oligomeric complexes with family members. Two transcript variants, one protein coding and the other non-protein coding, have been found for this gene. [provided by RefSeq, Nov 2012]
External Links:
Ensembl ID:ENSG00000114520
HGNC ID:HGNC:11175
Entrez Gene:8723



Expression Profile of SNX4 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-10a-5p
YES
YES
NO
hsa-miR-10b-5p
YES
YES
NO
hsa-miR-125a-5p
YES
YES
NO
hsa-miR-125b-5p
YES
YES
NO
hsa-miR-1271-5p
YES
YES
NO
hsa-miR-129-5p
YES
YES
NO
hsa-miR-134-5p
YES
YES
NO
hsa-miR-142-3p
YES
YES
NO
hsa-miR-181a-5p
YES
YES
NO
hsa-miR-181b-5p
YES
YES
NO
hsa-miR-181c-5p
YES
YES
NO
hsa-miR-181d-5p
YES
YES
NO
hsa-miR-182-5p
YES
YES
NO
hsa-miR-186-5p
YES
YES
NO
hsa-miR-194-5p
YES
YES
NO
hsa-miR-196a-5p
YES
YES
NO
hsa-miR-196b-5p
YES
YES
NO
hsa-miR-218-5p
YES
YES
YES
hsa-miR-221-3p
YES
YES
NO
hsa-miR-222-3p
YES
YES
NO
hsa-miR-224-5p
YES
YES
NO
hsa-miR-23a-3p
YES
YES
NO
hsa-miR-23b-3p
YES
YES
NO
hsa-miR-29a-3p
YES
YES
NO
hsa-miR-29b-3p
YES
YES
NO
hsa-miR-29c-3p
YES
YES
NO
hsa-miR-300
YES
YES
NO
hsa-miR-31-5p
YES
YES
NO
hsa-miR-320a
YES
YES
NO
hsa-miR-320b
YES
YES
NO
hsa-miR-320c
YES
YES
NO
hsa-miR-320d
YES
YES
NO
hsa-miR-329-3p
YES
YES
NO
hsa-miR-335-5p
YES
YES
NO
hsa-miR-338-3p
YES
YES
NO
hsa-miR-340-5p
YES
YES
NO
hsa-miR-34a-5p
YES
YES
NO
hsa-miR-34c-5p
YES
YES
NO
hsa-miR-362-3p
YES
YES
NO
hsa-miR-381-3p
YES
YES
NO
hsa-miR-410-3p
YES
YES
NO
hsa-miR-449a
YES
YES
NO
hsa-miR-449b-5p
YES
YES
NO
hsa-miR-495-3p
YES
YES
NO
hsa-miR-543
YES
YES
NO
hsa-miR-876-5p
YES
YES
NO
hsa-miR-96-5p
YES
YES
NO
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